Job Description P76204 Confidence 100.00% Date Thu Jan 5 12:20:28 GMT 2012 Rank 7 Aligned Residues 223 % Identity 18% Template c3pfmA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf Resolution 2.91 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		M	K	I	F	L	E	N	L	Y	H	S	D	C	Y	F	L	P	I	R	D	N	Q	.	.	Q	V	L	V	G	V	E	L	I	T	H	F	S	S	E	D	G	T	V	R	I	P	T	S	R	V	I	A	Q	L	T	E	E	Q	H	W	Q	L	F	S	E	Q	L	E	L	L	K	S	C	Q	H	F	F	I	Q	H
Query Conservation																								.	.
Alig confidence										.														.	.																																																				.	.	.
Template Conservation										.																																																																			.	.	.
Template Sequence		L	D	R	A	L	S	E	Q	.	H	F	Q	L	Y	F	Q	P	V	V	A	A	R	D	T	H	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I	P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	S	R	L	D	L	L	X	L	E	Q	V	L	R	Q	X	A	.	.	.	S	H
Template Known Secondary structure									T	.												S	S		T	T	S													T	T	S																T																	G	G	.	.	.	G
Template Predicted Secondary structure										.																																																																			.	.	.
Template SS confidence
		417	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490				.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																	.	.	.	.																											.
Query SS confidence																																	.	.	.	.																											.
Query Sequence		K	L	F	A	W	L	N	L	T	P	Q	V	A	T	L	L	L	E	R	D	N	Y	A	G	E	L	L	K	Y	P	F	.	.	.	.	I	E	L	L	I	N	E	N	Y	P	H	L	N	E	G	K	D	N	R	G	L	L	S	L	S	Q	.	V	Y	P	L	V	L	G	N	L	G	A	G	N	S	T	M	K	A
Query Conservation																																	.	.	.	.																											.
Alig confidence																																	.	.	.	.												.															.
Template Conservation																																																.
Template Sequence		E	D	C	L	A	L	N	L	S	A	A	T	L	A	D	P	H	A	L	N	R	V	F	E	I	L	R	Q	H	S	D	L	G	P	R	L	T	L	E	I	G	E	E	Q	L	P	.	E	Q	A	X	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	X	I	G	N
Template Known Secondary structure																														T	G	G	G	T	T	T							S	S	S			.																T									T	T	T	G	G	G	G	G	G
Template Predicted Secondary structure																																																.
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.		.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		V	F	D	G	L	F	T	R	V	M	L	D	K	S	F	I	Q	Q	Q	I	T	H	R	S	F	E	P	F	I	R	A	I	Q	A	Q	I	S	P	C	C	N	C	I	I	A	G	G	I	D	T	A	E	I	L	A	Q	I	T	P	F	D	F	H	A	L	Q	G	C	L	W	.	P	A	V	P	I
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence		L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	D	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A	E	R	V	E	T	E	G	E	L	Q	V	I	R	E	X	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	A	P	W
Template Known Secondary structure						T		S						G	G	G	G	T	T	T	T	T		T																T	T										S											T		S				S	G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions