Job Description P0ADG4 Confidence 2.62% Date Thu Jan 5 11:20:58 GMT 2012 Rank 89 Aligned Residues 77 % Identity 16% Template c2a8vA_ PDB info PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex Resolution 2.40 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																																															.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.
Query Sequence		E	A	V	I	I	D	T	I	R	K	S	Y	P	Q	H	T	I	I	T	E	E	S	G	E	L	E	G	T	D	Q	D	V	Q	W	V	I	D	P	L	D	G	T	T	N	F	I	K	R	L	P	H	F	A	V	S	I	A	V	R	I	K	.	.	.	.	.	G	R	T	E	V	A	V	V	Y	D	P	M	R	N
Query Conservation																																																															.	.	.	.	.
Alig confidence																							.																	.	.	.																					.	.	.	.	.
Template Conservation																							.																	.	.	.
Template Sequence		Q	D	I	I	F	A	I	L	K	Q	H	A	K	S	G	E	D	I	F	G	D	.	G	V	L	E	I	L	Q	D	G	F	G	F	L	R	S	A	.	.	.	D	S	S	Y	L	A	G	P	D	D	I	Y	V	S	P	S	Q	I	R	R	F	N	L	R	T	G	D	T	I	S	G	K	I	R	P	P	K	E	G
Template Known Secondary structure															T	T							.							T	T	S							T	.	.	.	T	T	T	T	S			T	T													T			T	T												T	T
Template Predicted Secondary structure																							.																	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		123	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	F	T	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	Y	F	A	L
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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