 |
Job Description | P77455 | Confidence | 24.38% | Date | Thu Jan 5 12:29:26 GMT 2012 |
Rank | 179 | Aligned Residues | 82 |
% Identity | 17% | Template | c3ojlA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:cap5o; |
PDBTitle: native structure of the udp-n-acetyl-mannosamine dehydrogenase cap5o2 from staphylococcus aureus
|
Resolution | 2.80 Å |
|
 |
  |   |
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | |
. | . | 210 | . | . | . | |
|
|
|
. | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  | . |  |  |  |  |
|
| . | . | . | . |
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | C | W | G | M | L | E | K | L | A | P | T | W | L | G | G | M | P | A | I | I | K | P | A | T | A | T | A | Q | L | T | Q | A | M | V | K | S | I | V | D | S | G | L | V | P | E | G | A | . |
I | S | L | I | C | G | . |
. |
. |
. |
S | A | G | D | L | L | D | H | L | D | S | Q | D | V | V | T | F | T | G | S | A |
Query Conservation |   |
|
|   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |
|
|
|   |
|
|   |
|
| . |   |
|
|
|   |
| . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|   |   | . |
|
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
Template Sequence |   |
L | V | M | R | A | L | D | S | I | L | P | F | L | K | K | G | N | T | I | I | V | E | . |
S | T | I | A | P | K | T | M | D | D | F | V | K | P | V | I | E | N | L | G | F | T | I | G | E | D | I | Y | L | V | H | C | P | E | R | V | L | P | G | K | I | L | E | E | L | V | H | N | N | R | I | I | G | G | V | T | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | G | G | G |
|
| T | T |
|  |  |  |  |
| . | S |
|
|
| T | T |  |  |  |  | T |  |  |  |  |  |  | T | T | T |
|
| B | T | T | T | B |  |  |  |  |
|
|
|
|
|
| S | S |
|  |  |  |  |  |  |  | S |
|  |  |  |  |  | S | S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
96 | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | |
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . |
  |
  |   |
235 | . | . | . | . | 240 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
A | T | G | Q | M | L | R | V |
Query Conservation |   |
  |   |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
Template Sequence |   |
A | C | I | E | A | G | K | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
175 | . | . | . | . | 180 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|