 |
Job Description | P77455 | Confidence | 94.53% | Date | Thu Jan 5 12:29:26 GMT 2012 |
Rank | 119 | Aligned Residues | 74 |
% Identity | 18% | Template | c2prxB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:thioesterase superfamily protein; |
PDBTitle: crystal structure of thioesterase superfamily protein (zp_00837258.1)2 from shewanella loihica pv-4 at 1.65 a resolution
|
Resolution | 1.50 Å |
|
 |
  |   |
581 | . | . | . | . | . | . | . | . | 590 | . | . | |
|
|
. | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | V | H | G | Y | F | V | L | S | A | A | A | . |
. |
. |
G | L | F | V | D | A | G | V | G | P | V | I | A | N | Y | G | L | E | S | L | R | F | I | E | P | V | K | P | G | D | T | I | Q | V | R | L | T | C | K | R | K | T | L | K | K | Q | R | S | A | E | E | K | P | T | G | V | V | E | W | A | V | E | V | F | N |
Query Conservation |   |
|
|   |
|   |   |   |   |
|   |   |   | . | . | . |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |
|   |   |   |
|
|   |   |
|
|
|
|   |   |   |   |
|
|   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |
|   |
|
|   |
|
|   |   |
|   |   |
|   |   |   |
|   |
|
|   |   | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |   |   |
|   |   |   |
|   |
Template Sequence |   |
F | V | Y | G | G | L | I | A | S | L | I | D | C | H | G | T | G | S | A | S | A | A | A | Q | R | P | R | F | V | T | A | A | L | N | I | D | Y | L | A | P | T | P | X | G | V | E | L | E | L | V | G | E | I | K | E | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | K | V | V | V | E | I | A | L | S | A | L | C |
Template Known Secondary structure |   |
B | B |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
| S |
|
| B | T | T | S |
|  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 120 | . | . | . |
  |
  |   |
658 | . | 660 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | H | Q | T | P | V | A | L |
Query Conservation |   |
|   |
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |   |
|
|
|
Template Sequence |   |
A | R | G | H | X | V | A | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
141 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|