Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFR0
Confidence32.10%DateThu Jan 5 11:27:01 GMT 2012
Rank59Aligned Residues44
% Identity16%Templatec3l6gA_
PDB info PDB header:glycine betaine-binding proteinChain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20...... ...30.........40.........
Predicted Secondary structure 




.






Query SS confidence 
























.






















Query Sequence  RKIKIGLALGSGAARGWSHIGVINA. LKKVGIEIDIVAGCSIGSLVGAA
Query Conservation     



 
 


 

    


  .
 
 

  
 
 


 


 

 
Alig confidence 







...













.












.








Template Conservation    
 
   ... 
        
    

  
  

    .       

Template Sequence  KKVDLVYM. . . NWDSEVASINVLTQAMKEHGFDVKTTAL. DNAVAWQTV
Template Known Secondary structure 
...S
TT
.
Template Predicted Secondary structure 

...






.
Template SS confidence 
















































   321....... .330.........340.........350...... ...360.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions