Job Description P77399 Confidence 98.06% Date Thu Jan 5 12:28:38 GMT 2012 Rank 264 Aligned Residues 127 % Identity 16% Template c7mdhA_ PDB info PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form Resolution 2.40 Å

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		304	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.								.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure															.																		.	.	.	.	.	.	.
Query SS confidence															.																		.	.	.	.	.	.	.
Query Sequence		P	P	A	P	L	N	S	V	G	I	L	G	G	.	G	L	M	G	G	G	I	A	Y	V	T	A	C	K	A	G	I	.	.	.	.	.	.	.	P	V	R	I	K	D	I	N	P	Q	G	I	N	H	A	L	K	Y	S	W	D	Q	L	E	G	K	V	R	R	R	H	L	K	A	S	E	R	D	K	Q	L	A
Query Conservation															.																		.	.	.	.	.	.	.
Alig confidence															.														.				.	.	.	.	.	.	.												.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.																						.															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	W	K	K	L	V	N	I	A	V	S	G	A	A	G	M	I	S	N	H	L	L	F	K	L	A	S	.	G	E	V	F	G	Q	D	Q	P	I	A	L	K	L	L	G	S	E	R	S	F	.	Q	A	L	E	G	V	A	M	E	L	E	D	S	L	.	.	.	.	.	.	.	.	.	.	.	Y	P	L	L	R
Template Known Secondary structure													T	T	T	S													.	T	T	T	T		T	T											G	G	G		.												T	T	T	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																													.																						.															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.												.	.	.	.	.
		376	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.															.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Query SS confidence									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Query Sequence		L	I	S	G	T	T	D	.	Y	R	G	F	A	H	R	D	L	I	I	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	E	N	L	E	L	K	Q	Q	M	V	A	E	V	E	Q	N	C	A	A	H	T	I	F	A	S	N	T	S	S	L	P	I	G	D	I	A	A	.	.	.	.	.	.
Query Conservation									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Alig confidence									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.								.	.	.	.	.	.
Template Conservation																																																																			.	.
Template Sequence		E	V	S	I	G	I	D	P	Y	E	V	F	E	D	V	D	W	A	L	L	I	G	A	K	P	R	G	P	G	M	E	R	A	A	L	L	D	I	N	G	Q	I	F	A	D	Q	G	K	A	L	N	A	V	A	S	K	N	V	K	V	L	V	V	G	N	.	.	P	C	N	T	N	A	L	I	C	L	K	N	A
Template Known Secondary structure							S						T	T	T		S												T	T																									S		T	T							S	S	.	.	S											T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	T	R	P	E	Q	V	I	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	I	P	A	K	N	F	H	A	L
Template Known Secondary structure		T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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