Job Description P77399 Confidence 98.13% Date Thu Jan 5 12:28:38 GMT 2012 Rank 258 Aligned Residues 119 % Identity 19% Template c5mdhB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of ternary complex of porcine cytoplasmic malate2 dehydrogenase alpha-ketomalonate and tnad at 2.4 angstroms resolution Resolution 2.40 Å

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		310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.								.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure									.																		.	.	.	.	.	.	.
Query SS confidence									.																		.	.	.	.	.	.	.
Query Sequence		S	V	G	I	L	G	G	.	G	L	M	G	G	G	I	A	Y	V	T	A	C	K	A	G	I	.	.	.	.	.	.	.	P	V	R	I	K	D	I	N	P	Q	G	I	N	H	A	L	K	Y	S	W	D	Q	L	E	G	K	V	R	R	R	H	L	K	A	S	E	R	D	K	Q	L	A	L	I	S	G	T	T
Query Conservation									.																		.	.	.	.	.	.	.
Alig confidence									.													.					.	.	.	.	.	.	.												.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.																							.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	L	V	T	G	A	A	G	Q	I	A	Y	S	L	L	Y	S	I	G	.	N	G	S	V	F	G	K	D	Q	P	I	I	L	V	L	L	D	I	T	P	M	M	.	G	V	L	D	G	V	L	M	E	L	Q	D	C	A	L	P	L	L	K	.	.	.	.	.	.	.	.	.	.	.	D	V	I	A	T	D
Template Known Secondary structure							S	T	T	S	T											.	T	T	T	T	T		T	T											G	G	G		.													T			T	T			.	.	.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure																						.																							.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.												.	.	.	.	70	.
		382	.		.	.	.	.	.	.	390	.	.	.	.	.															.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.							.	.	.	.	.
Predicted Secondary structure				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																.	.	.	.	.	.
Query SS confidence				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																.	.	.	.	.	.
Query Sequence		D	Y	.	R	G	F	A	H	R	D	L	I	I	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	E	N	L	E	L	K	Q	Q	M	V	A	E	V	E	Q	N	C	A	A	H	T	.	.	I	F	A	S	N	T	S	S	L	P	I	G	D	I	A	.	.	.	.	.	.	A	H	A	T	R
Query Conservation				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																.	.	.	.	.	.
Alig confidence				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.						.	.	.	.							.	.	.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		K	E	E	I	A	F	K	D	L	D	V	A	I	L	V	G	S	M	P	R	R	D	G	M	E	R	K	D	L	L	K	A	N	V	K	I	F	K	C	Q	G	A	A	L	D	K	Y	A	K	K	S	V	K	V	I	V	V	G	N	.	.	.	.	P	A	N	T	N	C	L	T	A	S	K	S	A	P	S	I	P
Template Known Secondary structure							T	T	T		S							S					S	S	S		S		T	T																			S		T	T							S	S	.	.	.	.	S											T		T	T	S
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		439	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	Q	V	I	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	N	F	S	C	L
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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