Job Description P77399 Confidence 100.00% Date Thu Jan 5 12:28:38 GMT 2012 Rank 37 Aligned Residues 257 % Identity 30% Template c3r0oA_ PDB info PDB header:lyase Chain: A: PDB Molecule:carnitinyl-coa dehydratase; PDBTitle: crystal structure of carnitinyl-coa hydratase from mycobacterium avium Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	S	A	F	T	L	N	V	R	L	D	N	I	A	V	I	T	I	D	V	P	G	E	K	M	N	T	L	K	A	E	F	A	S	Q	V	R	A	I	I	K	Q	L	R	E	N	K	E	L	R	G	V	V	F	V	S	A	K	P	D	N	F	I	A	G	A	D	I	N	M	I	G	N	C	K	T	A	Q	E
Query Conservation
Alig confidence																											.																																																						.
Template Conservation																											.																																																						.
Template Sequence		V	T	R	Q	A	A	V	V	E	R	R	G	N	V	A	L	I	T	I	D	R	P	D	A	R	.	N	A	V	N	G	A	V	S	T	A	V	G	D	A	L	E	E	A	Q	R	D	P	E	V	W	A	V	V	I	T	G	A	G	D	K	S	F	C	A	G	A	D	L	K	A	I	S	R	G	E	N	L	Y	.
Template Known Secondary structure				S		S							T	T									G	G	G	T	.	T		B																			T	T									S	S	S	S	B	S				B							T	T				S	.
Template Predicted Secondary structure																											.																																																						.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	A	L	A	R	Q	G	Q	Q	L	M	A	E	I	H	A	L	P	I	Q	V	I	A	A	I	H	G	A	C	L	G	G	G	L	E	L	A	L	A	C	H	G	R	V	C	T	D	D	P	K	T	V	L	G	L	P	E	V	Q	L	G	L	L	P	G	S	G	G	T	Q	R	L	P	R	L	I	G	V	S
Query Conservation
Alig confidence		.																																																			.	.
Template Conservation		.																																																			.	.
Template Sequence		.	H	A	E	H	P	E	W	G	F	A	G	Y	V	H	H	F	I	D	K	P	T	I	A	A	V	N	G	T	A	L	G	G	G	S	E	L	A	L	A	S	D	L	V	I	A	C	E	S	A	S	.	.	F	G	L	P	E	V	K	R	G	L	I	A	G	A	G	G	V	F	R	I	V	E	Q	L	P	R	K
Template Known Secondary structure		.		S	S		G	G	G		G	G	G	T	T	T				S	S								S	B			T									S	S						T	T			.	.				G	G	G	G	T	T	S			T	T	T									S
Template Predicted Secondary structure		.																																																			.	.
Template SS confidence
			86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	E	M	I	L	T	G	K	Q	L	R	A	K	Q	A	L	K	L	G	L	V	D	D	V	V	P	H	S	I	L	L	E	A	A	V	E	L	A	K	K	E	R	P	S	S	R	P	L	P	V	R	E	R	I	L	A	G	P	L	G	R	A	L	L	F	K	M	V	G	K	K	T	E	H	K	T	Q	G
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	L	E	L	V	L	T	G	E	P	M	T	A	S	D	A	L	R	W	G	L	I	N	E	V	V	P	D	G	T	V	V	E	A	A	L	A	L	A	E	R	I	T	C	N	A	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																						T	S	S	S					T	T															T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		N	Y	P	A	T	E	R	I	L	E	V	V	E	T	G	L	.	.	.	A	Q	G	T	S	S	G	Y	D	A	E	A	R	A	F	G	E	L	A	M	T	P	Q	S	Q	A	L	R	S	I	F	F	A	S	T	D	V	K	K	D
Query Conservation																		.	.	.
Alig confidence		.	.	.														.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	V	Q	A	S	K	R	V	A	Y	G	A	D	D	G	I	I	G	A	E	E	P	K	W	E	R	T	I	R	E	F	T	E	L	L	K	S	E	D	A	K	E	G	P	L	A	F	A	E	K	R	Q	P	V	W	K
Template Known Secondary structure		.	.	.											T			T	T			G	G	G																T	S											T	T	T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions