Job Description P77399 Confidence 99.42% Date Thu Jan 5 12:28:38 GMT 2012 Rank 137 Aligned Residues 195 % Identity 21% Template c3ojlA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:cap5o; PDBTitle: native structure of the udp-n-acetyl-mannosamine dehydrogenase cap5o2 from staphylococcus aureus Resolution 2.80 Å

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		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350									.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																												.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.
Query Sequence		N	S	V	G	I	L	G	G	G	L	M	G	G	G	I	A	Y	V	T	A	C	K	A	G	I	P	V	R	I	K	D	I	N	P	Q	G	I	N	H	A	L	K	.	.	.	.	.	.	.	.	Y	S	W	D	Q	L	E	G	K	V	R	R	R	H	L	K	A	S	E	R	D	K	Q	L	A	L	I	S	G	T
Query Conservation																																												.	.	.	.	.	.	.	.
Alig confidence																						.																						.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.																																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	L	T	V	V	G	L	G	Y	I	G	L	P	T	S	I	M	F	A	.	K	H	G	V	D	V	L	G	V	D	I	N	Q	Q	T	I	D	K	L	Q	N	G	Q	I	S	I	E	E	P	G	L	Q	E	V	Y	E	E	V	L	S	S	G	K	L	K	V	S	T	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	T	T										.		T	T								S										T	T			S	S			T	T											T	T	S					S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.																																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.											.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.				.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																																		.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.																																		.	.	.
Query Sequence		T	D	Y	R	G	F	A	H	R	D	L	I	I	E	A	V	F	E	.	.	.	.	.	.	.	.	.	.	N	L	E	L	K	Q	Q	M	V	A	E	V	E	Q	N	C	A	A	H	T	I	F	A	S	N	T	S	S	L	P	I	G	D	.	.	.	I	A	A	H	A	T	R	P	E	Q	V	I	G	L	H	F
Query Conservation																				.	.	.	.	.	.	.	.	.	.																																		.	.	.
Alig confidence		.	.	.	.															.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	T	P	E	A	S	D	V	F	I	I	A	V	P	T	P	N	N	D	D	Q	Y	R	S	C	D	I	S	L	V	M	R	A	L	D	S	I	L	P	F	L	K	K	G	N	T	I	I	V	E	S	T	I	A	P	K	T	M	D	D	F	V	K	P	V	I	E	N	L	G	F	T	I	G	E	D	I
Template Known Secondary structure		.	.	.	.	S					S										B		S	S	T	T			B													G	G	G			T	T							S				T	T					T							T	T	T			B	T	T	T	B
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
					448	.	450	.	.	.	.	.	.	.	.										.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.											490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure		.	.	.												.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.												.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	F	S	P	V	E	K	M	P	L	V	E	.	.	.	.	.	.	.	.	.	I	I	P	H	A	G	T	S	A	Q	T	I	A	T	T	V	K	L	A	K	K	Q	G	K	T	P	I	V	V	R	D	.	.	.	.	.	.	.	.	.	.	K	A	G	F	Y	V	N	R	I	L	A	P	Y	I	N	E
Query Conservation		.	.	.												.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.												.	.	.	.	.	.	.	.	.					.	.																										.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																													.	.																																													.	.
Template Sequence		Y	L	V	H	C	P	E	R	V	L	P	G	K	I	L	E	E	L	V	H	N	N	R	I	I	G	G	.	.	V	T	K	A	C	I	E	A	G	K	R	V	Y	R	T	F	V	Q	G	E	M	I	E	T	D	A	R	T	A	E	M	S	K	L	M	E	N	T	Y	R	D	V	N	I	.	.	A	L	A	N	E
Template Known Secondary structure												S	S									S							.	.	S	S												T	T	T			S																										.	.
Template Predicted Secondary structure																													.	.																																													.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220
		506	.	.	.	510	.	.		.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		A	I	R	M	L	T	Q	.	G	E	R	V	E	H	I	D	A	A	L
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		L	T	K	I	C	N	N	L	N	I	N	V	L	D	V	I	E	M	A
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions