Job Description P77399 Confidence 100.00% Date Thu Jan 5 12:28:38 GMT 2012 Rank 64 Aligned Residues 251 % Identity 21% Template c3m6nA_ PDB info PDB header:lyase Chain: A: PDB Molecule:rpff protein; PDBTitle: crystal structure of rpff Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																																							.	.	.	.
Query SS confidence						.																																							.	.	.	.
Query Sequence		S	A	F	T	.	L	N	V	R	L	D	N	I	A	V	I	T	I	D	V	P	G	E	K	M	N	T	L	K	A	E	F	A	S	Q	V	R	A	I	I	K	Q	L	.	.	.	.	R	E	N	K	E	L	R	G	V	V	F	V	S	A	K	P	D	N	F	I	A	G	A	D	I	N	M	I	G	N	C	K	T
Query Conservation						.																																							.	.	.	.
Alig confidence						.														.						.																			.	.	.	.
Template Conservation																				.						.
Template Sequence		S	T	L	R	I	I	E	E	P	Q	R	D	V	Y	W	I	H	M	.	H	A	D	L	R	.	A	C	F	S	T	R	L	V	D	D	I	T	G	Y	Q	T	N	L	G	Q	R	L	N	T	A	G	V	L	A	P	H	V	V	L	A	S	D	S	D	V	F	N	L	G	G	D	L	A	L	F	C	Q	L	I	R
Template Known Secondary structure		T	T							T	T	T	T							.		T	T			.		S	B																							T		S	S								S	S	S	S	S	B			B
Template Predicted Secondary structure																				.						.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		80	.	.	.	.							.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		A	Q	E	A	E	.	.	.	.	.	.	A	L	A	R	Q	G	Q	Q	L	M	A	E	I	H	A	L	P	I	Q	V	I	A	A	I	H	G	A	C	L	G	G	G	L	E	L	A	L	A	C	H	G	R	V	C	T	D	D	P	K	T	V	L	G	L	P	E	V	Q	L	G	L	L	P	G	S	G	G	T	Q
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																																																		.	.
Template Conservation																																																														.	.
Template Sequence		E	G	D	R	A	R	L	L	D	Y	A	Q	R	C	V	R	G	V	H	A	F	H	V	G	L	G	A	R	A	H	S	I	A	L	V	Q	G	N	A	L	G	G	G	F	E	A	A	L	S	C	H	T	I	I	A	E	E	G	V	M	.	.	M	G	L	P	E	V	L	F	D	L	F	P	G	M	G	A	Y	S
Template Known Secondary structure			T																					T	G	G	G	T	T									S				T									S	S						T	T			.	.				G	G	G	G	G	T					S	S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	P	R	L	I	G	V	S	T	A	L	E	M	I	L	T	G	K	Q	L	R	A	K	Q	A	L	K	L	G	L	V	D	D	V	V	P	H	S	I	L	L	E	A	A	V	E	L	A	K	K	E	R	P	S	S	R	P	L	P	V	R	E	R	I	L	A	G	P	L	G	R	A	L	L	F	K	M	V	G
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	M	C	Q	R	I	S	A	H	L	A	Q	K	I	M	L	E	G	N	L	Y	S	A	E	Q	L	L	G	M	G	L	V	D	R	V	V	P	R	G	Q	G	V	A	A	V	E	Q	V	I	R	E	S	K	R	T	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	T	S																								T	S		S					T	T														T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	T	E	H	K	T	Q	G	N	Y	P	A	T	E	R	I	L	E	V	V	E	T	G	L	A	Q	G	T	S	S	G	Y	D	A	E	A	R	A	F	G	E	L	A	M	T	P	Q	S	Q	A	L	R	S	I	F	F	A	S	T	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	W	A	A	M	Q	Q	V	R	E	M	T	T	A	V	P	L	E	E	M	M	R	I	T	E	I	W	V	D	T	A	M	Q	L	G	E	K	S	L	R	T	M	D	R	L	V	R	A	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.											T	T	T																			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions