Job Description P77399 Confidence 99.32% Date Thu Jan 5 12:28:38 GMT 2012 Rank 145 Aligned Residues 199 % Identity 18% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.					.	.	.	.	.											.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	L	N	S	V	G	I	L	G	G	G	L	M	G	G	G	I	A	Y	V	T	A	C	K	A	G	.	.	I	P	V	R	I	K	D	I	N	P	Q	.	.	.	.	G	I	N	H	A	.	.	.	.	.	.	.	.	.	.	L	K	Y	S	W	D	Q	L	E	G	K	V	R	R	R	H	L	K	A	S	E
Query Conservation																													.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.
Alig confidence																									.				.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation																									.																																																			.	.	.	.	.	.
Template Sequence		G	P	I	K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	.	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	.	.	.	.	.	.
Template Known Secondary structure			S										S	T	T										.		S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T	T	.	.	.	.	.	.
Template Predicted Secondary structure																									.																																																			.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.											.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.										.	430
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query Sequence		R	D	K	Q	L	A	L	I	S	G	T	T	D	Y	R	G	F	A	H	R	D	L	I	I	E	A	V	F	.	.	.	.	.	.	.	.	.	.	E	N	L	E	L	K	Q	Q	M	V	A	E	V	E	Q	N	C	A	A	H	T	I	F	A	S	N	T	S	S	L	P	.	.	.	.	.	.	.	.	.	I	G
Query Conservation																														.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	K	F	E	C	T	P	D	F	S	R	I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L
Template Known Secondary structure		.	.	.	.	.	.						S		G	G	G	G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.			.	.	.								.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480		.	.	.	.	.	.	.	.	.											490
Predicted Secondary structure																											.	.				.	.	.	.	.	.	.																							.										.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.				.	.	.	.	.	.	.																							.										.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	A	A	H	A	T	R	P	E	Q	V	I	G	L	H	F	F	S	P	V	E	K	M	P	.	.	L	V	E	.	.	.	.	.	.	.	I	I	P	H	A	G	T	S	A	Q	T	I	A	T	T	V	K	L	A	K	K	Q	.	G	K	T	P	I	V	V	R	D	.	.	.	.	.	.	.	.	.	.	K
Query Conservation																											.	.				.	.	.	.	.	.	.																							.										.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.									.	.				.	.	.	.	.	.	.					.	.																	.										.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.																									.	.
Template Sequence		E	E	E	S	G	L	K	A	G	E	D	F	A	L	A	.	.	H	A	P	E	R	V	M	V	G	R	L	L	K	N	I	R	E	H	D	R	I	V	G	G	.	.	I	D	E	A	S	T	K	R	A	V	E	L	Y	S	P	V	L	T	V	G	Q	V	I	P	M	S	A	T	A	A	E	V	T	K	T	A	E
Template Known Secondary structure									B	T	T	T	B				.	.								T	T	S								S							.	.	S	S												G	G	G		S	S
Template Predicted Secondary structure																	.	.																									.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.		.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		A	G	F	Y	V	N	R	I	L	A	P	Y	I	N	E	A	I	R	M	L	T	Q	.	G	E	R	V	E	H	I	D	A	A	L
Query Conservation																								.
Alig confidence										.	.													.
Template Conservation										.	.
Template Sequence		N	T	F	R	D	L	Q	I	.	.	A	A	I	N	Q	L	A	L	Y	C	E	A	M	G	I	N	V	Y	D	V	R	T	G	V
Template Known Secondary structure										.	.													T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		239	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions