Job Description P77399 Confidence 99.66% Date Thu Jan 5 12:28:38 GMT 2012 Rank 100 Aligned Residues 222 % Identity 18% Template c3dzbA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus Resolution 2.46 Å

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		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.
Predicted Secondary structure																											.	.																																																			.
Query SS confidence																											.	.																																																			.
Query Sequence		N	S	V	G	I	L	G	G	G	L	M	G	G	G	I	A	Y	V	T	A	C	K	A	G	I	.	.	P	V	R	I	K	D	I	N	P	Q	G	I	N	H	A	L	K	Y	S	W	D	Q	L	E	G	K	V	R	R	R	H	L	K	A	S	E	R	D	K	Q	L	A	L	I	S	G	T	T	D	Y	.	R	G
Query Conservation																											.	.																																																			.
Alig confidence																						.					.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																						.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	I	Y	I	A	G	L	G	L	I	G	G	S	L	A	L	G	I	K	.	R	D	H	P	D	Y	E	I	L	G	Y	N	R	S	D	Y	S	R	N	I	A	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	I	V	D	R	A	T	G	D	F	K	E	F
Template Known Secondary structure							S			S												.	T	T		T	T	S							S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S		S				S
Template Predicted Secondary structure																						.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																							.	.	.	50	.	.	.	.	.	.	.	.	.	60
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.					.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.																						.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.																						.	.	.	.	.	.
Query Sequence		F	A	H	R	D	L	I	I	E	A	V	F	E	N	L	E	L	K	Q	Q	M	V	A	E	V	E	Q	N	C	A	A	H	T	I	F	A	S	N	T	S	S	L	P	I	G	D	I	A	A	.	.	.	.	H	A	T	R	P	E	Q	V	I	G	L	H	F	F	S	P	V	E	K	M	P	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.																						.	.	.	.	.	.
Alig confidence														.	.																																				.	.	.	.																						.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		A	P	L	A	D	V	I	I	L	A	V	P	.	.	I	K	Q	T	X	A	Y	L	K	E	L	A	D	L	D	L	K	D	N	V	I	I	T	D	A	G	S	T	K	R	E	I	V	E	A	A	E	R	Y	L	T	G	K	N	V	Q	F	V	G	S	H	P	X	A	G	S	A	A	D	V	T	L	F	E	N	A
Template Known Secondary structure		G	G	G		S						S		.	.												T	T	S				T	T								S														T	T	S	S										B						T	T	T	T	T	T	S
Template Predicted Secondary structure														.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.		.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																																								.	.	.	.	.	.	.
Query SS confidence																																			.																																								.	.	.	.	.	.	.
Query Sequence		L	V	E	I	I	P	H	A	G	T	S	A	Q	T	I	A	T	T	V	K	L	A	K	K	Q	G	K	T	P	I	V	V	R	.	D	K	A	G	F	Y	V	N	R	I	L	A	P	Y	I	N	E	A	I	R	M	L	T	Q	G	E	R	V	E	H	I	D	A	A	L	V	K	F	G	.	.	.	.	.	.	.
Query Conservation																																			.																																								.	.	.	.	.	.	.
Alig confidence																																			.																																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Y	I	F	T	P	T	S	L	T	K	E	T	T	I	P	E	L	K	D	I	L	S	G	L	K	S	R	Y	V	E	I	D	A	A	E	H	D	R	V	T	S	Q	I	S	H	F	P	H	L	L	A	S	G	L	X	E	Q	A	A	D	Y	A	Q	A	H	E	X	T	N	H	F	A	A	G	G	F	R	D	X
Template Known Secondary structure									T	T			T	T									G	G	G	G																				T																						T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
					528	.	530	.	.	.	.	.	.	.	.	.										540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure		.	.	.													.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.													.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	F	P	V	G	P	I	Q	L	L	D	E	V	.	.	.	.	.	.	.	.	.	G	I	D	T	G	T	K	I	I	P	V	L	E	A	A	Y
Query Conservation		.	.	.													.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	I	A	E	S	E	P	G	X	W	A	S	I	L	X	T	N	G	P	A	V	L	D	R	I	E	D	F	K	K	R	L	D	H	V	A	D	L	I
Template Known Secondary structure			G	G	G	G	S												T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions