Job Description P77399 Confidence 99.61% Date Thu Jan 5 12:28:38 GMT 2012 Rank 105 Aligned Residues 252 % Identity 13% Template c2uyyD_ PDB info PDB header:cytokine Chain: D: PDB Molecule:n-pac protein; PDBTitle: structure of the cytokine-like nuclear factor n-pac Resolution 2.5 Å

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		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		N	S	V	G	I	L	G	G	G	L	M	G	G	G	I	A	Y	V	T	A	C	K	A	G	I	P	V	R	I	K	D	I	N	P	Q	G	I	N	H	A	L	K	Y	S	W	D	Q	L	E	G	K	V	R	R	R	H	L	K	A	S	E	R	D	K	Q	L	A	L	I	S	G	T	T	D	Y	.	R	G	F	A
Query Conservation																																																																													.
Alig confidence																						.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																						.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	I	G	F	L	G	L	G	L	M	G	S	G	I	V	S	N	L	L	.	K	M	G	H	T	V	T	V	W	N	R	T	A	E	K	C	D	L	F	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	A	R	L	G	R	T	P	A	E	V	V	S
Template Known Secondary structure		S								S												.		T	T								S	S	G	G	G	G						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					S
Template Predicted Secondary structure																						.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.																									.	310	.	.	.	.	.	.	.	.	.	320	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.			410	.	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																								.	.													.	.																	.
Query SS confidence																								.	.													.	.																	.
Query Sequence		H	R	D	L	I	I	E	A	V	F	E	N	L	E	L	K	Q	Q	M	V	A	E	.	.	V	E	Q	N	C	A	A	H	T	I	F	A	.	.	S	N	T	S	S	L	P	I	G	D	I	A	A	H	A	T	.	R	P	E	Q	V	I	G	L	H	F	F	S	P	V	E	K	M	P	L	V	E	I	I	P	H
Query Conservation																								.	.													.	.																	.
Alig confidence																								.	.													.	.																	.
Template Conservation
Template Sequence		T	C	D	I	T	F	A	C	V	S	D	P	K	A	A	K	D	L	V	L	G	P	S	G	V	L	Q	G	I	R	P	G	K	C	Y	V	D	M	S	T	V	D	A	D	T	V	T	E	L	A	Q	V	I	V	S	R	G	G	R	F	L	E	A	P	V	S	G	N	Q	Q	L	S	N	D	G	M	L	V	I	L
Template Known Secondary structure				S							S	S										S	T	T		G	G	G	G			T	T							S																	T	T										S								T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.									.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.		.	.	.	.	.	.	530	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.													.											.
Query SS confidence																																									.	.	.	.	.	.	.	.													.											.
Query Sequence		A	G	T	S	A	Q	T	I	A	T	T	V	K	L	A	K	K	Q	G	K	T	P	I	V	V	R	D	K	A	G	F	Y	V	N	R	I	L	A	P	.	.	.	.	.	.	.	.	Y	I	N	E	A	I	R	M	L	T	Q	G	.	E	R	V	E	H	I	D	A	A	L	.	V	K	F	G	F	P	V	G	P
Query Conservation																																									.	.	.	.	.	.	.	.													.											.
Alig confidence																																									.	.	.	.	.	.	.	.													.											.
Template Conservation
Template Sequence		A	A	G	D	R	G	L	Y	E	D	C	S	S	C	F	Q	A	M	G	K	T	S	F	F	L	G	E	V	G	N	A	A	K	M	M	L	I	V	N	M	V	Q	G	S	F	M	A	T	I	A	E	G	L	T	L	A	Q	V	T	G	Q	S	Q	Q	T	L	L	D	I	L	N	Q	G	Q	L	A	S	I	F	L
Template Known Secondary structure												T															S	S	T	T																														T	T													S	T	T
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		533	.	.	.	.	.	.										540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	L	L	D	E	V	.	.	.	.	.	.	.	.	.	G	I	D	T	G	T	K	I	I	P	V	L	E	A	A	Y	G	E	R	F	S	A	P	A	N	V	V	S	S	I	L	N	D	D	R	K	G	R	K	N	G	R	G	F	Y	L	Y
Query Conservation									.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																						.
Template Conservation																																							.
Template Sequence		D	Q	K	C	Q	N	I	L	Q	G	N	F	K	P	D	F	Y	L	K	Y	I	Q	K	D	L	R	L	A	I	A	L	G	D	A	V	N	H	.	P	T	P	M	A	A	A	A	N	E	V	Y	K	R	A	K	A	L	D	Q	S	D	N	D	M
Template Known Secondary structure											T					S	S	B																		T	T		.																		T	T		T	T	S	B	G
Template Predicted Secondary structure																																							.
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions