Job Description P77399 Confidence 98.50% Date Thu Jan 5 12:28:38 GMT 2012 Rank 233 Aligned Residues 130 % Identity 20% Template c2ldxA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-lactate dehydrogenase; PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4 Resolution 2.96 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		D	A	P	P	A	P	L	N	S	V	G	I	L	G	G	G	L	M	G	G	G	I	A	Y	V	T	A	C	K	A	G	I	.	.	P	V	R	I	K	D	I	N	P	Q	G	I	N	H	A	L	K	Y	S	W	D	Q	L	E	G	K	V	R	R	R	H	L	K	A	S	E	R	D	K	Q	L	A	L	I	S	G
Query Conservation																																		.	.
Alig confidence																															.			.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	D	K	L	S	R	C	K	I	T	V	V	G	V	G	D	V	G	M	A	C	A	I	S	I	L	L	K	.	G	L	A	D	E	L	A	L	V	D	A	D	T	D	K	L	R	G	E	A	L	D	L	Q	H	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	L	S	T	P	K	I	V	F
Template Known Secondary structure		S															S												T	T	.	T	S		S							S															T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S
Template Predicted Secondary structure																															.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.														.	70	.	.	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.															.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																			.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																			.
Query Sequence		T	T	D	Y	R	G	F	A	H	R	D	L	I	I	E	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	N	L	E	L	K	Q	Q	M	V	A	E	V	E	Q	N	C	A	A	H	T	I	F	A	.	S	N	T	S	S	L	P	I	G	D	I	A	A	H	A	T	R	P	.	E	Q	V	I
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																			.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																			.
Template Conservation
Template Sequence		G	K	D	Y	N	V	S	A	N	S	K	L	V	I	I	T	A	G	A	R	M	V	S	G	Q	T	R	L	D	L	L	Q	R	N	V	A	I	M	K	A	I	V	P	G	V	I	Q	N	S	P	D	C	K	I	I	V	V	T	N	P	V	D	I	L	T	Y	V	V	W	K	I	S	G	F	P	V	G	R	V	I
Template Known Secondary structure			S	S	G	G	G	G	T	T									S					T	T	T		S	S		T	T											T	T	T					S	T	T							S	S	S														S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		444	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		159	160

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions