Job Description P77399 Confidence 96.21% Date Thu Jan 5 12:28:38 GMT 2012 Rank 390 Aligned Residues 142 % Identity 19% Template c2f00A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc Resolution 2.50 Å

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		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		T	D	V	K	K	D	P	G	S	D	A	P	P	A	P	L	N	S	V	G	I	L	G	G	G	L	M	G	G	.	G	I	A	Y	V	T	A	C	K	A	G	I	P	V	R	I	K	D	I	N	P	Q	G	I	N	H	A	L	K	Y	S	W	D	Q	L	E	G	K	V	R	R	R	H	L	K	A	S	E	R	D
Query Conservation																															.
Alig confidence																															.								.															.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																							.															.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		Q	Q	L	A	K	L	R	S	I	V	P	E	X	R	R	V	R	H	I	H	F	V	G	I	G	G	A	G	X	G	G	I	A	E	V	L	A	.	N	E	G	Y	Q	I	S	G	S	D	L	A	P	N	.	.	.	.	.	.	.	.	.	.	P	V	T	Q	Q	L	X	N	L	G	A	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	T	S				T	T								T	T	T	S	T	T										.		T	T								S	S			.	.	.	.	.	.	.	.	.	.									T	T		.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.															.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.											.	.	.	.	.	60	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.			.	.	.	.	.	400	.	.	.	.	.	.	.	.	.											410	.	.	.	.	.	.	.	.	.	420	.								.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																									.	.																.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query SS confidence																									.	.																.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query Sequence		K	Q	L	A	L	I	S	G	T	T	D	Y	R	G	F	A	H	R	D	L	I	I	E	.	.	A	V	F	E	N	L	E	L	K	Q	Q	M	V	A	E	.	.	.	.	.	.	.	.	.	.	V	E	Q	N	C	A	A	H	T	I	F	A	.	.	.	.	.	.	.	S	N	T	S	S	L	P	I	G	D	I
Query Conservation																									.	.																.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Alig confidence		.	.	.	.																				.	.																.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	T	I	Y	F	N	H	R	P	E	N	V	R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V	A	A	H	E	A	R	I	P	V	I	R	R	A	E	X	L	A	E	L	X	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	X	V	S	S	I	Y
Template Known Secondary structure		.	.	.	.				S	S			G	G	G	G	T	T		S						T	T			T	T										T	T															T	T	S							S	S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	H	A	T	R	P	E	Q	V	I	G	L	H	F	F	S	P	V	E	K	M	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	A	R	L
Template Known Secondary structure				T	T												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions