Job Description P77399 Confidence 100.00% Date Thu Jan 5 12:28:38 GMT 2012 Rank 4 Aligned Residues 426 % Identity 33% Template c1zcjA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase Resolution 1.90 Å

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		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.							.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		T	P	Q	S	Q	A	L	R	S	I	F	F	A	S	T	D	V	K	K	D	P	G	S	D	A	P	.	.	.	.	.	.	P	A	P	L	N	S	V	G	I	L	G	G	G	L	M	G	G	G	I	A	Y	V	T	A	C	K	A	G	I	P	V	R	I	K	D	I	N	P	Q	G	I	N	H	A	L	K	Y	S
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.																									.
Template Conservation																																																										.
Template Sequence		S	G	Q	A	K	A	L	Q	Y	A	F	F	A	E	K	S	A	N	K	W	S	T	P	S	G	A	S	W	K	T	A	S	A	Q	P	V	S	S	V	G	V	L	G	L	G	T	M	G	R	G	I	A	I	S	F	A	.	R	V	G	I	S	V	V	A	V	E	S	D	P	K	Q	L	D	A	A	K	K	I	I
Template Known Secondary structure														G	G	G	G	G	G	S		B		T	T			B	T	T	T															S												.	T	T	T								S	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	Q	L	E	G	K	V	R	R	R	H	L	K	A	S	E	R	D	K	Q	L	A	L	I	S	G	T	T	D	Y	R	G	F	A	H	R	D	L	I	I	E	A	V	F	E	N	L	E	L	K	Q	Q	M	V	A	E	V	E	Q	N	C	A	A	H	T	I	F	A	S	N	T	S	S	L	P	I	G	D	I
Query Conservation
Alig confidence																		.	.
Template Conservation																		.	.
Template Sequence		T	F	T	L	E	K	E	A	S	R	A	H	Q	N	G	Q	.	.	A	S	A	K	P	K	L	R	F	S	S	S	T	K	E	L	S	T	V	D	L	V	V	E	A	V	F	E	D	M	N	L	K	K	K	V	F	A	E	L	S	A	L	C	K	P	G	A	F	L	C	T	N	T	S	A	L	N	V	D	D	I
Template Known Secondary structure															T	T		.	.											S		G	G	G	G	T	T		S								S																S		T	T								S	S	S
Template Predicted Secondary structure																		.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	H	A	T	R	P	E	Q	V	I	G	L	H	F	F	S	P	V	E	K	M	P	L	V	E	I	I	P	H	A	G	T	S	A	Q	T	I	A	T	T	V	K	L	A	K	K	Q	G	K	T	P	I	V	V	R	D	K	A	G	F	Y	V	N	R	I	L	A	P	Y	I	N	E	A	I	R	M	L	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	S	T	D	R	P	Q	L	V	I	G	T	H	F	F	S	P	A	H	V	M	R	L	L	E	V	I	P	S	R	Y	S	S	P	T	T	I	A	T	V	M	S	L	S	K	K	I	G	K	I	G	V	V	V	G	N	C	Y	G	F	V	G	N	R	M	L	A	P	Y	Y	N	Q	G	F	F	L	L	E	E
Template Known Secondary structure			T	T	S	S		G	G	G								S	S	T	T	T										S	S																T	T						B			S	T	T	T	T																		T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.											.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	R	V	E	H	I	D	A	A	L	V	K	F	G	F	P	V	G	P	I	Q	L	L	D	E	V	G	I	D	T	G	T	K	I	I	P	V	L	E	A	A	Y	G	E	.	.	.	.	.	.	.	.	.	.	R	F	S	A	P	A	N	V	V	S	S	I	L	N	D	D	R	K	G	R	K	N	G	R	G
Query Conservation																																															.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	K	P	E	D	V	D	G	V	L	E	E	F	G	F	K	M	G	P	F	R	V	S	D	L	A	G	L	D	V	G	W	K	I	R	K	G	Q	G	L	T	G	P	S	L	P	P	G	T	P	V	R	K	R	G	N	S	R	Y	S	P	L	G	D	M	L	C	E	A	G	R	F	G	Q	K	T	G	K	G
Template Known Secondary structure		T														T		S	S																					T	T	S	S	S	S				T	T			T	T			T	T					T								T	T			B	G	G	G	T	B	S
Template Predicted Secondary structure
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.							.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		F	Y	L	Y	G	Q	K	G	R	K	S	K	K	Q	V	D	P	A	I	Y	P	L	I	G	T	Q	.	.	.	.	.	.	G	Q	G	R	I	S	A	P	Q	V	A	E	R	C	V	M	L	M	L	N	E	A	V	R	C	V	D	E	Q	V	I	R	S	V	R	D	G	D	I	G	A	V	F	G	I	G	F	P
Query Conservation																												.	.	.	.	.	.
Alig confidence																.												.	.	.	.	.	.
Template Conservation																.
Template Sequence		W	Y	Q	Y	D	K	P	L	G	R	I	H	K	P	.	D	P	W	L	S	T	F	L	S	Q	Y	R	E	V	H	H	I	E	Q	R	T	I	S	K	E	E	I	L	E	R	C	L	Y	S	L	I	N	E	A	F	R	I	L	E	E	G	M	A	A	R	P	E	H	I	D	V	I	Y	L	H	G	Y	G	W	P
Template Known Secondary structure		S				S	S	T	T		S					.															T	T																													T	T	S	B	S													S
Template Predicted Secondary structure																.
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.		.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.			.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		P	F	L	G	G	P	F	R	Y	I	D	S	L	G	A	G	E	V	V	A	I	M	Q	R	L	A	T	Q	Y	G	S	.	.	R	F	T	P	C	E	R	L	V	E	M	G	A	R	G	E	S	F	W	K	T
Query Conservation																																	.	.
Alig confidence																																	.	.
Template Conservation
Template Sequence		R	H	K	G	G	P	M	F	Y	A	A	S	V	G	L	P	T	V	L	E	K	L	Q	K	Y	Y	R	Q	N	P	D	I	P	Q	L	E	P	S	D	Y	L	R	R	L	V	A	Q	G	S	P	P	L	K	E
Template Known Secondary structure		G	G	G																											T	T		G	G	G	S											T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710