Job Description P0A8G6 Confidence 100.00% Date Thu Jan 5 11:07:47 GMT 2012 Rank 2 Aligned Residues 189 % Identity 40% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		A	K	V	L	V	L	Y	Y	S	M	Y	G	H	I	E	T	M	A	R	A	V	A	E	G	A	S	K	V	D	G	A	E	V	V	V	K	R	V	P	E	T	M	P	P	Q	L	F	E	K	A	G	G	.	K	T	Q	T	A	P	V	A	T	P	Q	E	L	A	D	Y	D	A	I	I	F	G	T	P	T	R	F
Query Conservation																																																						.
Alig confidence											.																			.																								.
Template Conservation											.																			.
Template Sequence		P	N	I	L	V	L	F	Y	G	.	Y	G	S	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	.	G	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	V	K	D	I	P	E	V	T	L	D	D	M	R	W	A	D	G	F	A	I	G	S	P	T	R	Y
Template Known Secondary structure											.	S	S																	.	T												S		G	G	G		T	T			G	G	G	S	T	T	S		B										S									B	T
Template Predicted Secondary structure											.																			.
Template SS confidence
		5	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		G	N	M	S	G	Q	M	R	T	F	L	D	Q	T	G	G	L	W	A	S	G	A	L	Y	G	K	L	A	S	V	F	S	S	T	G	T	.	G	G	G	Q	E	Q	T	I	T	S	T	W	T	T	L	A	H	H	G	M	V	I	V	P	I	G	Y	A	A	Q	E	L	F	D	V	S	Q	V	R	G	G	T	P
Query Conservation																																						.
Alig confidence																																						.																																	.	.
Template Conservation																																																																							.	.
Template Sequence		G	N	M	A	G	G	L	K	T	F	L	D	T	T	A	I	L	W	K	D	N	V	L	Y	G	K	P	V	T	F	F	T	E	A	S	T	V	H	G	G	H	E	T	T	I	L	T	M	S	T	Y	A	Y	H	F	G	M	I	I	V	P	I	G	Y	G	I	P	E	L	.	.	F	Q	T	T	T	G	G	G	P
Template Known Secondary structure		T	B											T	T					T	T	T	T	T	T	T									B	S	S	T	T	S	S	S	S							T							T							T	T		S	T			.	.				S	S	S		B	T
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	A	T	T	I	A	G	G	D	G	S	R	Q	P	S	Q	E	E	L	S	I	A	R	Y	Q	G	E	Y	V	A	G	L	A	V	K	L	N
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		Y	G	A	T	H	L	G	S	K	E	.	.	.	E	L	D	E	M	E	R	K	I	A	R	F	Q	G	K	R	I	T	E	V	A	K	A	I	K
Template Known Secondary structure		T	B				B	S	S	S	S	.	.	.
Template Predicted Secondary structure												.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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