Job Description P0A8G6 Confidence 99.63% Date Thu Jan 5 11:07:47 GMT 2012 Rank 48 Aligned Residues 164 % Identity 18% Template c2wc1A_ PDB info PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Resolution 2.17 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		M	A	K	V	L	V	L	Y	Y	S	M	Y	G	H	I	E	T	M	A	R	A	V	A	E	G	A	S	K	V	D	G	A	E	V	V	V	K	R	V	P	E	T	M	P	P	Q	L	F	E	K	A	G	G	K	T	Q	T	A	P	V	A	T	P	Q	E	L	A	D	Y	D	A	I	I	F	G	T	P	T	R	.
Query Conservation																																																																																	.
Alig confidence																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	K	I	G	L	F	F	G	S	D	T	G	T	T	R	K	I	A	K	Q	I	K	D	M	F	D	D	.	.	E	V	M	A	K	P	L	N	V	N	R	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	D	F	M	A	Y	D	F	L	I	L	G	T	P	T	L	G
Template Known Secondary structure				S								S	S	S											T	T	S		T	.	.	T	T	B						G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S									B	T
Template Predicted Secondary structure																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.																				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.
Predicted Secondary structure													.	.	.	.																																	.	.	.																									.
Query SS confidence													.	.	.	.																																	.	.	.																									.
Query Sequence		F	G	N	M	S	G	Q	M	R	T	F	.	.	.	.	L	D	Q	T	G	G	L	W	A	S	G	A	L	Y	G	K	L	A	S	V	F	S	S	T	G	T	G	G	G	Q	E	Q	.	.	.	T	I	T	S	T	W	T	T	L	A	H	H	G	M	V	I	V	P	I	G	Y	A	A	Q	.	E	L	F	D	V
Query Conservation													.	.	.	.																																	.	.	.																									.
Alig confidence													.	.	.	.																																	.	.	.																									.
Template Conservation
Template Sequence		D	G	Q	L	P	G	L	S	A	N	A	A	S	E	S	W	E	E	F	L	P	R	I	A	D	Q	D	F	S	G	K	T	I	A	L	F	G	L	G	D	Q	V	T	Y	P	L	E	F	V	N	A	L	F	F	L	H	E	F	F	S	D	R	G	A	N	V	V	G	R	W	P	A	K	G	Y	G	F	E	D	S
Template Known Secondary structure		T	T	B		S	S	G	G	G	T		S	S							G	G	G	G	T	T				T	T											T	T	T		T	T	S	T	T	T											T	T	T										T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	V	R	G	G	T	P	Y	G	A	T	T	I	A	G	G	D	G	S	R	Q	P	S	Q	E	E	L	S	I	A	R	Y	Q	G	E	Y	V	A	G	L	A	V	K	L	N
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	V	V	E	G	E	F	L	G	L	A	L	D	Q	D	N	Q	A	A	L	T	.	.	.	.	.	.	.	.	.	.	.	.	P	E	R	L	K	G	W	L	S	L	I	A
Template Known Secondary structure		T	T			T	T			S	S					T	T	T		G	G	G		.	.	.	.	.	.	.	.	.	.	.	.											T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.													.	.	.	.	.	.	.	.	170	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions