 |
Job Description | P0A8G6 | Confidence | 21.34% | Date | Thu Jan 5 11:07:47 GMT 2012 |
Rank | 445 | Aligned Residues | 91 |
% Identity | 24% | Template | c1xdwA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:nad+-dependent (r)-2-hydroxyglutarate |
PDBTitle: nad+-dependent (r)-2-hydroxyglutarate dehydrogenase from2 acidaminococcus fermentans
|
Resolution | 1.98 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | V | L | V | L | Y | Y | S | M | Y | G | H | I | E | T | M | A | R | A | V | A | E | G | A | S | K | V | D | G | A | E | V | V | V | K | R | V | P | E | T | M | P | P | Q | L | F | E | K | A | G | G | K | T | Q | T | A | P | V | A | T | P | Q | E | L | A | D | Y | D | A | I | I | F | G | T | P | T | R | F | G |
Query Conservation |   |
  |
|
|
|
|
|   |   |
|   |   |
|
|
|   |   |
|
|   |   |
|   |   |
|   |   |   |   |   |
|   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|
|
|
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
| . | . | . |
|   |
|   |
|
|   |   |
|
|   |   |
|   |   |
| . | . | . | . |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|
|   |   |   |
|
|
|
|   |   |
Template Sequence |   |
C | T | V | G | V | V | . |
. |
. |
G | L | G | R | I | G | R | V | A | A | Q | I | F | H | G | M | . |
. |
. |
. |
G | A | T | V | I | G | E | D | V | F | E | I | K | G | I | E | D | . |
. |
. |
. |
. |
. |
. |
. |
Y | C | T | Q | V | S | L | D | E | V | L | E | K | S | D | I | I | T | I | H | A | P | Y | I | K | E |
Template Known Secondary structure |   |
S |  |  |  |  |  | . | . | . |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | . | . | T |
|  |  |  |  |  |
| S | S |
|
|
| S |
| T | T | . | . | . | . | . | . | . | . | T |
|  |  |
|
|  |  |  |  |  |  |  |
| S |  |  |  |  |
|
|
|
|
| T | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
147 | . | . | 150 | . | . | |
|
|
. | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
|
|
|
. | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | M | S | G | Q | M | R | T | F | L | D | Q | T | G | G | L | W | A | S | G | A | L | Y | G | K | L | A | S | V | F | S | S | T | G | T | G | G |
Query Conservation |   |
  |   |   |   |   |
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |   |
|   |   |
| . | . | . | . | . | . | . | . | . | . | . |
|   |
|
|   |
|
|
|   |   |
|
|   |
Template Sequence |   |
N | G | A | V | V | T | R | D | F | L | K | K | M | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | D | G | A | I | L | V | N | C | A | R | G | Q |
Template Known Secondary structure |   |
T |
|
| S | B |
|  |  |  |  |  | T | S | . | . | . | . | . | . | . | . | . | . | . |
| T | T |  |  |  |  |  |
| S |
| G | G |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
212 | . | . | . | . | . | . | . | 220 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 230 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|