Job Description P17444 Confidence 100.00% Date Thu Jan 5 11:36:11 GMT 2012 Rank 5 Aligned Residues 526 % Identity 26% Template c3q9tB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:choline dehydrogenase and related flavoproteins; PDBTitle: crystal structure analysis of formate oxidase Resolution 2.24 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	D	Y	I	I	I	G	A	G	S	A	G	N	V	L	A	T	R	L	T	E	D	P	N	T	S	V	L	L	L	E	A	G	G	P	D	Y	R	F	D	F	R	T	Q	M	P	A	A	L	A	F	P	L	Q	G	K	R	Y	N	W	A	Y	E	T	E	P	E	P	F	M	N	N	R	R	M	E	C	G	R
Query Conservation
Alig confidence																																																				.
Template Conservation																																																				.
Template Sequence		H	F	D	F	V	I	V	G	G	G	T	A	G	N	T	V	A	G	R	L	A	E	N	P	N	V	T	V	L	I	V	E	A	G	I	G	N	P	E	D	I	P	E	I	T	T	P	S	S	A	.	M	D	L	R	N	S	K	Y	D	W	A	Y	K	T	T	M	V	R	R	D	D	Y	E	R	I	E	K	P	N
Template Known Secondary structure									S		S											T	T	S	T	T	S							S	S		S		G	G	G						S	G	G	G	G	.	G	G	G	T	T	S	T	T	B											T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
				82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.									.	150	.
Predicted Secondary structure		.	.																																																																				.	.	.	.	.	.	.	.
Query SS confidence		.	.																																																																				.	.	.	.	.	.	.	.
Query Sequence		.	.	G	K	G	L	G	G	S	S	L	I	N	G	M	C	Y	I	R	G	N	A	L	D	L	D	N	W	A	Q	E	P	G	L	E	N	W	S	Y	L	D	C	L	P	Y	Y	R	K	A	E	T	R	D	M	G	E	N	D	Y	H	G	G	D	G	P	V	S	V	T	.	.	.	.	.	.	.	.	T	S	K
Query Conservation		.	.																																																																				.	.	.	.	.	.	.	.
Alig confidence		.	.																														.																																						.	.	.	.	.	.	.	.
Template Conservation																																	.
Template Sequence		T	R	G	K	T	L	G	G	S	S	S	L	N	Y	F	T	W	V	P	G	H	K	A	T	F	D	Q	W	E	E	F	.	G	G	K	E	W	T	W	D	P	L	V	P	Y	L	R	K	S	A	T	Y	H	D	D	P	R	L	Y	S	P	E	L	E	K	I	G	G	G	G	P	I	P	I	S	H	A	E	L	I
Template Known Secondary structure				B		S	T	T	G	G	G	G	T	S														T	T				.			G	G	G	S										T	T						T	T			S		G	G	G	G	G	G			S		S
Template Predicted Secondary structure																																	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		P	G	V	N	P	L	F	E	A	M	I	E	A	G	V	Q	A	G	Y	P	R	T	D	D	L	N	G	Y	Q	Q	E	G	F	G	P	M	D	R	T	V	T	P	Q	G	R	R	A	S	T	A	R	G	Y	L	D	Q	A	K	S	R	P	N	L	T	I	R	T	H	A	M	T	D	H	I	I	F	D	G	K	.
Query Conservation																																																																																	.
Alig confidence																																					.													.	.	.	.																												.
Template Conservation																																					.													.	.	.	.
Template Sequence		D	E	M	A	P	F	R	E	N	L	T	K	A	W	K	S	M	G	Q	P	L	I	E	N	I	Y	D	G	E	M	D	G	L	T	H	.	C	C	D	T	I	Y	R	G	Q	R	S	G	.	.	.	.	S	F	L	F	V	K	N	K	P	N	I	T	I	V	P	E	V	H	S	K	R	L	I	I	N	E	A	D
Template Known Secondary structure		G	G	G													T	T	T			B		S			S	S	S								.				S			T	T					.	.	.	.	G	G	G	G	S	S	S		T	T						S										T	T	T
Template Predicted Secondary structure																																					.													.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
			231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	R	A	V	G	V	E	W	L	E	G	D	S	T	I	P	T	R	A	T	A	N	K	E	V	L	L	C	A	G	A	I	A	S	P	Q	I	L	Q	R	S	G	V	G	N	A	E	L	L	A	E	F	D	I	P	L	V	H	E	L	P	G	V	G	E	N	L	Q	D	H	L	E	M	Y	L	Q	Y	E	C	K
Query Conservation		.
Alig confidence		.														.
Template Conservation																.
Template Sequence		R	T	C	K	G	V	T	V	V	T	A	A	G	N	.	E	L	N	F	F	A	D	R	E	V	I	L	S	Q	G	V	F	E	T	P	K	L	L	M	L	S	G	I	G	P	T	R	E	L	S	R	H	G	I	N	T	I	V	D	S	R	H	V	G	Q	N	L	M	D	H	P	G	V	P	F	V	L	R	V	K
Template Known Secondary structure		T										T	T	S		.																										T	T										T	T				S				T	T	T	T				B
Template Predicted Secondary structure																.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.																											.	.	.	.	360	.
Predicted Secondary structure																		.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	V	S	L	Y	P	A	L	Q	W	W	N	Q	P	K	.	.	I	G	A	E	W	L	F	G	G	T	G	V	G	A	S	N	H	F	E	A	G	G	F	I	R	S	R	E	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	P	N	I	Q
Query Conservation																		.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	F	G	M	D	D	V	L	L	R	H	G	P	K	R	D	A	V	V	S	A	Y	N	K	N	R	S	G	P	V	G	S	G	L	L	E	L	V	G	F	P	R	I	D	K	Y	L	E	K	D	A	E	Y	R	K	A	K	A	A	N	G	G	K	D	P	F	S	P	L	G	Q	P	H	F	E	L	D	F	V
Template Known Secondary structure		T	T	S	S	S					T	S		S														S		S	G	G	G			S															T											T	T	T			S	S		T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		Y	H	F	L	P	V	A	I	N	Y	N	G	S	N	A	V	K	E	H	G	F	Q	C	H	V	G	S	M	R	S	P	S	R	G	H	V	R	I	K	S	R	D	P	H	Q	H	P	A	I	L	F	N	Y	M	S	H	E	Q	D	W	Q	E	F	R	D	A	I	R	I	T	R	E	I	M	H	Q	.	P	A	L
Query Conservation																																																																														.
Alig confidence																																																																														.
Template Conservation
Template Sequence		C	M	F	G	T	A	F	Q	W	H	F	P	T	P	K	T	G	D	H	L	T	V	V	V	D	L	V	R	P	I	S	D	P	G	E	V	T	L	N	S	A	D	P	F	Q	Q	P	N	I	N	L	N	F	F	A	N	D	L	D	I	I	A	M	R	E	G	I	R	F	S	Y	D	L	L	F	K	G	E	G	F
Template Known Secondary structure		S	S			G	G	G		T	T	S				S	S	S											S			S								S		S		T	T	S								T	T		S																				T	S	T	T	G
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.		.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		D	Q	Y	R	G	R	E	I	S	P	G	V	E	C	Q	T	D	E	Q	L	D	E	F	V	R	N	H	A	E	T	A	F	H	P	C	G	T	C	K	M	G	Y	D	E	.	M	S	V	V	D	G	E	G	R	V	H	G	L	E	G	L	R	V	V	D	A	S	I	M	P	Q	I	I	T	G	N	L	N	A	T
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		K	D	L	V	E	S	E	Y	P	W	E	M	P	L	D	S	D	K	E	M	H	R	A	V	L	D	R	C	Q	T	A	F	H	P	T	G	T	A	R	L	S	K	N	I	D	Q	G	V	V	D	P	K	L	K	V	H	G	I	K	K	L	R	V	A	D	A	S	V	I	P	I	I	P	D	C	R	I	Q	N	S
Template Known Secondary structure		G	G	T						S	S				T	T																	S			B		T	T		B		S	S	T	T	T		S	B		T	T	S	B	B	T	T		B	S					S	G	G	G		S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	M	I	G	E	K	I	A	D	M	I	R	G	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	A	V	G	E	K	C	A	D	M	I	K	A	E	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.