Job Description P17444 Confidence 99.13% Date Thu Jan 5 11:36:11 GMT 2012 Rank 55 Aligned Residues 155 % Identity 22% Template c2zxiC_ PDB info PDB header:fad-binding protein Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: structure of aquifex aeolicus gida in the form ii crystal Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	D	Y	I	I	I	G	A	G	S	A	G	N	V	L	A	T	R	L	T	E	D	P	N	T	S	V	L	L	L	E	A	G	G	P	D	Y	R	F	D	F	R	T	Q	M	P	A	A	L	A	F	P	L	Q	G	K	R	Y	N	W	A	Y	E	T	E	P	E	P	F	M	N	N	R	R	M	E	C	G	R
Query Conservation
Alig confidence																								.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	D	V	V	V	I	G	G	G	H	A	G	I	E	A	A	L	A	A	A	R	.	M	G	A	K	T	A	M	F	V	L	N	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S						S	S													.	T	T								S		G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	G	L	G	G	S	S	L	I	N	G	M	C	Y	I	R	G	N	A	L	D	L	D	N	W	A	Q	E	P	G	L	E	N	W	S	Y	L	D	C	L	P	Y	Y	R	K	A	E	T	R	D	M	G	E	N	D	Y	H	G	G	D	G	P	V	S	V	T	T	S	K	P	G	V	N	P	L	F	E	A	M
Query Conservation
Alig confidence		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	T	I	G	Q	M	S	C	N	P	A	I	G	G	I	A	K	G	I	V	V	R	E	I	D	A	L	G	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M
Template Known Secondary structure		.	.	.	G	T	T				S		S					T	T												T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70																																																.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	A	G	V	Q	A	G	Y	P	R	T	D	D	L	N	G	Y	Q	Q	E	G	F	G	P	M	D	R	T	V	T	P	Q	G	R	R	A	S	T	A	R	G	Y	L	D	Q	A	K	S	R	P	N	L	T	I	R	T	H	A	M	T	D	H	I	I	F	D	G	K	R	A	V	G	V	E	W	L	E	G	D
Query Conservation
Alig confidence																																.	.	.	.	.																					.
Template Conservation																																.	.	.	.	.																					.
Template Sequence		G	K	A	I	D	Q	T	G	I	Q	F	K	M	L	N	T	R	K	G	K	A	V	Q	S	P	R	A	Q	A	D	.	.	.	.	.	K	K	R	Y	R	E	Y	M	K	K	V	C	E	N	Q	E	N	L	Y	I	.	K	Q	E	E	V	V	D	I	I	V	K	N	N	Q	V	V	G	V	R	T	N	L	G	V
Template Known Secondary structure																S	T	T	S		G	G	G									.	.	.	.	.															S	T	T				.			S								S	S	S	B							T	T	S
Template Predicted Secondary structure																																.	.	.	.	.																					.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	I	P	T	R	A	T	A	N	K	E	V	L	L	C	A	G	A	I	A	S
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	E	Y	K	T	K	A	V	V	V	T	T	G	T	F	L	N
Template Known Secondary structure		.	.	.	.	.	.					S							T	T		B	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions