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Job DescriptionP17444
Confidence100.00%DateThu Jan 5 11:36:11 GMT 2012
Rank3Aligned Residues504
% Identity38%Templatec2jbvA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:choline oxidase; PDBTitle: crystal structure of choline oxidase reveals insights into2 the catalytic mechanism
Resolution1.86 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPFMNNRRMECGR
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Template Sequence  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRW. . MELLESGYDWDYPIEPQENGN. SFMRHAR
Template Known Secondary structure 

STTSTTS

SS


TT
BGGGG..GGGTTSTTB

B


SSS
.TT


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   13......20.........30.........40.........50.........60. ........70.........80.. .......
 
   82.......90.........100.........110.........120.........130...... ...140.........150.........
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Query Sequence  GKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAETRDMGEN. . DYHGGDGPVSVTTSKPGVNPLFE
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Template Sequence  AKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPP. KDPTGV
Template Known Secondary structure  B
STTGGGGTS

B




TT

TT
STT
BTTBTTS
BS
S

S.

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   90.........100.........110.........120.........130.........140.........150.........160.. ......
 
   160.........170.........180.. .......190.........200.........210.........220......... 230.......
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Query Sequence  AMIEAGVQAGYPRTDDLNGYQQE. GFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDG. KRAVGVEW
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Template Sequence  ALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDI
Template Known Secondary structure  TT

B

SSSSS

SS

B
TTSBB

TGGGTT
TT
S

TTSB
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   169170.........180.........190.........200.........210.........220.........230.........240........
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  LEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEPVSLYPA
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Template Sequence  VDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAE. .
Template Known Secondary structure  SSTTS

STT
TT


S
TTTT
SBB



SS


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   249250.........260.........270.........280.........290.........300.........310.........320......
 
   318.320.........330.........340.........350.........360....... ..370.........380.........390....
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Query Sequence  LQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPV. . . AINYNGSNAVKEHGFQCHVGSMRSPSR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . STQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSR
Template Known Secondary structure  .....................
SSS


SSTT
SS
SSS


TTTGGGT



SSTT



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   327..330.........340.........350.........360.........370.........380.....
 
   395....400.........410........ .420.........430.........440.........450.........460.........470..
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Query Sequence  GHVRIKSRDPHQHPAILFNYMSHE. . QDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAF
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Template Conservation 
       
      
           
             
               
                      
Template Sequence  GTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNTVY
Template Known Secondary structure  B
SSS
TTS



TT

TT
TSGGGTTTS
TT

S

S
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   386...390.........400.........410.........420.........430.........440.........450.........460.....
 
   473......480. ... .....490.........500.........510.........520.........530..
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Query Sequence  HPCGTCKMG. YDE. MSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIR
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Template Sequence  HPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR
Template Known Secondary structure 

B
TT
B

TT
TT
SB
TT
BBTTSBS
SGGG
SS

SS


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   466...470.........480.........490.........500.........510.........520.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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