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Job DescriptionP17444
Confidence99.48%DateThu Jan 5 11:36:11 GMT 2012
Rank27Aligned Residues182
% Identity21%Templatec2aczA_
PDB info PDB header:oxidoreductase/electron transportChain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPFMNNRRMECGR
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Template Sequence  EFDAVVIGAGGAGMRAALQISQ. SGQTCALLSKVFP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   7..10.........20........ .30.........40.
 
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Query Sequence  GKGLGGSSLINGMCYIRGN. . . . . . . ALDLDNWAQEPGLENWSYLDCLPYYRKAETRDMGENDYHGGDGPVSVTTSKPGV
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Template Sequence  . . . TRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEA. . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ...GGSGGGG

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   42.......50.........60.........70.........80.........90.....
 
   155....160.........170.........180 .........190.........200.........210.........220....
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Query Sequence  NPLFEAMIEAGVQAGYPRTDDLNGYQ. . . . . . . . . . QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDH
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Template Sequence  . . . . . . . ILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALD
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   96...100.........110.........120.........130.........140.........150.........160........
 
   225... .230.........240.........250.........260..
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Query Sequence  IIFD. GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIA
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Template Sequence  LVKNQDGAVVGCTALCIETGEVVYFKARA. TVLATGGAG
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   169170.........180.........190....... ..200......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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