Job Description P17444 Confidence 100.00% Date Thu Jan 5 11:36:11 GMT 2012 Rank 6 Aligned Residues 515 % Identity 23% Template c1naaB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cellobiose dehydrogenase; PDBTitle: cellobiose dehydrogenase flavoprotein fragment in complex with2 cellobionolactam Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.
Query SS confidence																																																											.	.	.	.
Query Sequence		Q	F	D	Y	I	I	I	G	A	G	S	A	G	N	V	L	A	T	R	L	T	E	D	P	N	T	S	V	L	L	L	E	A	G	G	P	D	Y	R	F	D	F	R	T	Q	M	P	A	A	L	A	F	P	L	Q	G	K	.	.	.	.	R	Y	N	W	A	Y	E	T	E	P	E	P	F	M	N	N	R	R	M
Query Conservation																																																											.	.	.	.
Alig confidence																								.																																			.	.	.	.
Template Conservation																								.
Template Sequence		P	Y	D	Y	I	I	V	G	A	G	P	G	G	I	I	A	A	D	R	L	S	E	.	A	G	K	K	V	L	L	L	E	R	G	G	P	S	T	K	Q	T	G	G	T	Y	V	A	P	W	A	T	S	S	G	L	T	K	F	D	I	P	G	L	F	E	S	L	F	T	D	S	N	P	F	W	W	C	K	D	I
Template Known Secondary structure											S													.	T	T								S	S				S	G	G	G	T						G	G	G	T	T	T	T			T	T	T		G	G	G	G	G	G	G	G	S		S	S		T	T	B		T	T	B
Template Predicted Secondary structure																								.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		E	C	G	R	G	K	G	L	G	G	S	S	L	I	N	G	M	C	Y	I	R	G	N	A	L	D	L	D	N	W	A	Q	E	P	G	L	E	N	W	.	.	S	Y	L	D	C	L	P	Y	Y	R	K	A	E	T	R	D	M	G	E	N	D	Y	H	G	G	D	G	P	V	S	V	T	T	S	K	P	G	V	N
Query Conservation																																									.	.
Alig confidence																																		.	.	.	.	.	.		.	.																					.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Sequence		T	V	F	A	G	C	L	V	G	G	G	T	S	V	N	G	A	L	Y	W	Y	P	N	D	G	D	F	S	S	S	V	G	.	.	.	.	.	.	W	P	S	S	W	T	N	H	A	P	Y	T	S	K	L	S	S	R	L	P	S	T	D	.	.	.	.	.	.	.	.	H	P	S	T	D	G	Q	R	Y	L	E
Template Known Secondary structure		S	S			B		S	T	T	G	G	G	G	T	S			B						G	G	G	G		G	G	G	T	.	.	.	.	.	.			G	G	G	S													S			B	S	.	.	.	.	.	.	.	.			S	T	T	S				S
Template Predicted Secondary structure																																		.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.							.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.									350	.	.	.	.	.	.	.	.	.	360
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		P	L	F	E	A	M	I	E	A	G	V	Q	A	G	Y	P	R	T	D	D	L	N	G	Y	.	Q	Q	E	G	F	G	P	M	D	R	T	V	T	P	Q	G	R	R	A	S	T	A	R	G	Y	L	D	Q	A	K	S	R	P	N	L	T	I	R	T	H	A	M	T	D	H	I	I	F	D	G	K	R	A	V	G
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		Q	S	F	N	V	V	S	Q	L	L	K	G	Q	G	Y	N	Q	A	T	I	N	D	N	P	N	Y	K	D	H	V	F	G	Y	S	A	F	D	F	L	N	G	K	R	A	G	P	V	A	T	Y	L	Q	T	A	L	A	R	P	N	F	T	F	K	T	N	V	M	V	S	N	V	V	R	N	G	S	Q	I	L	G
Template Known Secondary structure													T	T	T						G	G	G		T	T			T	T							B				T	T								T							T		T	T						S										T	T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		235	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290											.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure							.	.																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	W	L	E	.	.	G	D	S	T	I	P	T	R	A	T	A	N	K	E	V	L	L	C	A	G	A	I	A	S	P	Q	I	L	Q	R	S	G	V	G	N	A	E	L	L	A	E	F	D	I	P	L	V	H	E	L	P	.	.	.	.	.	.	.	.	.	.	G	V	G	E	N	L	Q	D	H	L	E	M
Query Conservation							.	.																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	T	N	D	P	T	L	G	P	N	G	F	I	P	V	T	P	K	G	R	V	I	L	S	A	G	A	F	G	T	S	R	I	L	F	Q	S	G	I	G	P	T	D	M	I	Q	T	V	Q	S	N	P	T	A	A	A	A	L	P	P	Q	N	Q	W	I	N	L	P	V	G	M	N	A	Q	D	N	P	S	I
Template Known Secondary structure					S		T	T	S	S	G	G	G														S												T	T	B	S										T	S							S			G	G	G		B				T	T	T	T	B	B
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.				.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																								.	.	.
Query SS confidence																									.	.																								.	.	.
Query Sequence		Y	L	Q	Y	E	C	K	E	P	V	S	L	Y	P	A	L	Q	W	W	N	Q	P	K	.	.	I	G	A	E	W	L	F	G	G	T	G	V	G	A	S	N	H	F	E	A	G	G	F	.	.	.	I	R	S	R	E	E	F	A	W	P	N	I	Q	Y	H	F	L	P	V	A	I	N	Y	N	G	S	N	A	V
Query Conservation																									.	.																								.	.	.
Alig confidence																									.	.																								.	.	.
Template Conservation
Template Sequence		N	L	V	F	T	H	P	S	I	D	A	Y	E	N	W	A	D	V	W	S	N	P	R	P	A	D	A	A	Q	Y	L	A	N	Q	S	G	V	F	A	G	A	S	P	K	L	N	F	W	R	A	Y	S	G	S	D	G	F	T	R	Y	A	Q	G	T	V	R	P	G	A	A	S	V	N	S	S	L	P	Y	N	A
Template Known Secondary structure								T	T				G	G	G	G	T	T	T	T	T	S													S		S	G	G	G	S		S												T	T	S												S		S					S	S				G
Template Predicted Secondary structure
Template SS confidence
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	H	G	F	Q	C	H	V	G	S	M	R	S	P	S	R	G	H	V	R	I	K	S	R	D	P	H	Q	H	P	A	I	L	F	N	Y	M	S	H	E	Q	D	W	Q	E	F	R	D	A	I	R	I	T	R	E	I	M	H	Q	P	A	L	D	Q	Y	R	G	R	E	I	S	P	G	V	E	C	Q	T	D
Query Conservation
Alig confidence																									.	.																																						.	.	.	.	.
Template Conservation																									.	.																																						.	.	.	.	.
Template Sequence		S	Q	I	F	T	I	T	V	Y	L	S	T	G	I	Q	S	R	G	R	I	G	I	D	.	.	A	A	L	R	G	T	V	L	T	P	P	W	L	V	N	P	V	D	K	T	V	L	L	Q	A	L	H	D	V	V	S	N	I	G	S	I	P	.	.	.	.	.	G	L	T	M	I	T	P	D	V	T	Q	T	L
Template Known Secondary structure		G	G										T	T					B						.	.	T	T										T	T		S																T	T	G	G	G	S	T	.	.	.	.	.	T						S		T	T	S
Template Predicted Secondary structure																									.	.																																						.	.	.	.	.
Template SS confidence
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.			.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660						.	.	.	.	.	.	.	.	.	670	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.		.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		E	Q	L	D	E	F	V	R	N	H	A	E	T	A	F	H	P	C	G	T	C	K	M	G	Y	D	E	.	M	S	V	V	D	G	E	G	R	V	H	G	L	E	G	L	R	V	V	D	A	S	I	M	P	Q	I	I	T	G	N	L	N	A	T	T	I	M	I	G	E	K	I	A	D	M	I	R	G	Q	E	A
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		E	E	Y	V	D	A	Y	D	P	A	T	M	N	S	N	H	W	V	S	S	T	T	I	G	S	S	P	Q	S	A	V	V	D	S	N	V	K	V	F	G	T	N	N	L	F	I	V	D	A	G	I	I	P	H	L	P	T	G	N	P	Q	G	T	L	M	S	A	A	E	Q	A	A	A	K	I	L	A	L	A	G
Template Known Secondary structure								S		G	G	G	G			S			B		T	T		B		S		T	T	T		S	B		T	T	S	B	B	T	T		S	S					S	G	G	G		S	S			S	S		T																		S	T	T
Template Predicted Secondary structure
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.
		537	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		754	.