Job Description P17444 Confidence 98.72% Date Thu Jan 5 11:36:11 GMT 2012 Rank 87 Aligned Residues 243 % Identity 13% Template c1gv4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif) Resolution 2.0 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																								.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	F	D	Y	I	I	I	G	A	G	S	A	G	N	V	L	A	T	R	L	T	E	.	D	P	N	T	S	V	L	L	L	E	A	G	G	P	D	Y	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	R	T	Q	M	P	A	A	L	A	F	P	L	Q	G	K	R	Y	N	W
Query Conservation																								.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	D	D	P	N	V	T	K	T	L	Q	F	R	Q	W	N	G	K	E	R	S	I	Y	F	Q	P	P	S	F
Template Known Secondary structure									S		S														S	T	T								S	S	S	S			B		S	G	G	G	G	T	G	G	G	S				T	T										T	T	S					S	B	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.														.	.	.	.	90	.	.								.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																									.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																									.
Query Sequence		A	Y	E	T	E	P	E	P	F	M	N	N	R	R	M	E	C	G	R	G	K	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	S	S	L	I	N	.	.	.	.	.	.	.	G	M	C	Y	I	R	G	N	A	L	D	L	D	N	W	A	Q	E	P	G	L	E	N	W	.	S	Y	L	D	C
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																									.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		Y	V	S	A	Q	D	L	P	N	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	H	L	D	V	R	G	N	M	V	K	L	N	D	G	S	Q	I	T	F	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	R	A	G	A	E	V	K	S	R	T	T	L	F	R	K	I	G	D	F
Template Known Secondary structure			B		G	G	G	G	G	G	S	T	T								S								T	T	T	T					T	T	S																								T	S						T	T						S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	Y	Y	R	K	A	E	T	R	D	M	G	E	N	D	Y	H	G	G	D	G	P	V	S	V	T	T	S	K	P	G	V	N	P	L	F	E	A	M	I	E	A	G	V	Q	A	G	Y	P	R	T	D	D	L	N	G	Y	Q	Q	E	G	F	G	P	M	D	R	T	V	T	P	Q	G	R	R	A	S	T	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	L	E	K	I	S	R	E	V	K	S	.	.	.	.	.	.	.	.	.	.	.	I	T	V	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	S	Q	A	S	G	I	E	V	I	Q	L	F	P	E	K	G	N	.	.	.	.	.	.	.	.	.	.	.	M	G	K	I	L	P	Q	Y	L
Template Known Secondary structure									T	T		S		.	.	.	.	.	.	.	.	.	.	.							S																										S	S	S	S	T	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.												.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.												.	340	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Y	L	D	Q	A	K	S	R	P	N	L	T	I	R	T	H	A	M	T	D	H	I	I	F	D	G	K	R	A	V	G	V	E	W	L	E	G	D	S	T	I	P	T	R	A	T	A	N	K	E	V	L	L	C	A	G	A	I	A	S	P	Q	I	L	Q	R	S	G	V	G
Query Conservation
Alig confidence																																		.	.	.	.											.	.	.
Template Conservation																																		.	.	.	.											.	.	.
Template Sequence		S	N	W	T	M	E	K	V	K	R	E	G	V	K	V	M	P	N	A	I	V	Q	S	V	G	V	S	G	G	R	L	L	.	.	.	.	I	K	L	K	D	G	R	K	V	E	.	.	.	T	D	H	I	V	T	A	V	G	L	E	P	N	V	E	L	A	K	T	G	G	L	E
Template Known Secondary structure											T	T	T						S										T	T				.	.	.	.				T	T	S					.	.	.		S													T					T	T
Template Predicted Secondary structure																																		.	.	.	.											.	.	.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.	.				390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions