Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	I	T	P	A	T	H	A	I	S	I	N	P	A	T	G	E	Q	L	S	V	L	P	W	A	G	A	D	D	I	E	N	A	L	Q	L	A	A	A	G	F	R	D	W	R	E	T	N	I	D	Y	R	A	E	K	L	R	D	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	K	A	L	R	A	R	S	E	E	M	A	Q	M	I	T	R	E	M	G	K	P	I	N	Q	A	R	A	E	V	A	K	S	A	N	L	C	D	W	Y	A	E	H	G	P	A	M	L	K	A	E	P	T	L	V	E	N	Q	Q	A
Secondary structure
SS confidence
Disorder																																																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	I	E	Y	R	P	L	G	T	I	L	A	I	M	P	W	N	F	P	L	W	Q	V	M	R	G	A	V	P	I	I	L	A	G	N	G	Y	L	L	K	H	A	P	N	V	M	G	C	A	Q	L	I	A	Q	V	F	K	D	A	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	P	Q	G	V	Y	G	W	L	N	A	D	N	D	G	V	S	Q	M	I	K	D	S	R	I	A	A	V	T	V	T	G	S	V	R	A	G	A	A	I	G	A	Q	A	G	A	A	L	K	K	C	V	L	E	L	G	G	S	D	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	I	V	L	N	D	A	D	L	E	L	A	V	K	A	A	V	A	G	R	Y	Q	N	T	G	Q	V	C	A	A	A	K	R	F	I	I	E	E	G	I	A	S	A	F	T	E	R	F	V	A	A	A	A	A	L	K	M	G	D	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		R	D	E	E	N	A	L	G	P	M	A	R	F	D	L	R	D	E	L	H	H	Q	V	E	K	T	L	A	Q	G	A	R	L	L	L	G	G	E	K	M	A	G	A	G	N	Y	Y	P	P	T	V	L	A	N	V	T	P	E	M	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	F	R	E	E	M	F	G	P	V	A	A	I	T	I	A	K	D	A	E	H	A	L	E	L	A	N	D	S	E	F	G	L	S	A	T	I	F	T	T	D	E	T	Q	A	R	Q	M	A	A	R	L	E	C	G	G	V	F	I	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Sequence		G	Y	C	A	S	D	A	R	V	A	F	G	G	V	K	K	S	G	F	G	R	E	L	S	H	F	G	L	H	E	F	C	N	I	Q	T	V	W	K	D	R	I
Secondary structure
SS confidence
Disorder																																									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3efv chain C Region: 6 - 462 Aligned: 457 Modelled: 457 Confidence: 100.0% Identity: 80% PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad Phyre2 PDB 1a4s chain A Region: 4 - 461 Aligned: 458 Modelled: 458 Confidence: 100.0% Identity: 30% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3ed6 chain B Region: 9 - 461 Aligned: 453 Modelled: 453 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus Phyre2 PDB 2jg7 chain G Region: 3 - 461 Aligned: 459 Modelled: 459 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity Phyre2 PDB 1bxs chain A Region: 4 - 460 Aligned: 457 Modelled: 457 Confidence: 100.0% Identity: 30% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 2ve5 chain H Region: 9 - 461 Aligned: 453 Modelled: 453 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa Phyre2 PDB 1o9j chain A Region: 4 - 460 Aligned: 457 Modelled: 457 Confidence: 100.0% Identity: 28% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3iwk chain B Region: 4 - 461 Aligned: 458 Modelled: 458 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) Phyre2 PDB 3ros chain A Region: 7 - 460 Aligned: 454 Modelled: 454 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent aldehyde dehydrogenase; PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 lactobacillus acidophilus Phyre2 PDB 2d4e chain B Region: 9 - 461 Aligned: 452 Modelled: 453 Confidence: 100.0% Identity: 31% PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 Phyre2 PDB 2w8q chain A Region: 3 - 459 Aligned: 457 Modelled: 457 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. Phyre2 PDB 3r31 chain A Region: 7 - 461 Aligned: 455 Modelled: 455 Confidence: 100.0% Identity: 33% PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens Phyre2 PDB 2o2q chain A Region: 9 - 460 Aligned: 452 Modelled: 452 Confidence: 100.0% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp Phyre2 PDB 3rh9 chain A Region: 4 - 459 Aligned: 456 Modelled: 456 Confidence: 100.0% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei Phyre2 PDB 3ifg chain H Region: 9 - 460 Aligned: 452 Modelled: 452 Confidence: 100.0% Identity: 35% PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 Phyre2 PDB 1ag8 chain A Region: 9 - 461 Aligned: 453 Modelled: 453 Confidence: 100.0% Identity: 30% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3k2w chain D Region: 9 - 461 Aligned: 453 Modelled: 453 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c Phyre2 PDB 1o04 chain A Region: 9 - 460 Aligned: 452 Modelled: 452 Confidence: 100.0% Identity: 30% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3qan chain B Region: 3 - 460 Aligned: 457 Modelled: 458 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans Phyre2 PDB 3b4w chain A Region: 4 - 461 Aligned: 457 Modelled: 458 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ Phyre2 1 c3efvC_ 2 d1a4sa_ 3 c3ed6B_ 4 c2jg7G_ 5 d1bxsa_ 6 c2ve5H_ 7 d1o9ja_ 8 c3iwkB_ 9 c3rosA_ 10 c2d4eB_ 11 c2w8qA_ 12 c3r31A_ 13 c2o2qA_ 14 c3rh9A_ 15 c3ifgH_ 16 d1ag8a_ 17 c3k2wD_ 18 d1o04a_ 19 c3qanB_ 20 c3b4wA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3efvC_ 100.0 80 PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad 2 d1a4sa_ 100.0 30 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 3 c3ed6B_ 100.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus 4 c2jg7G_ 100.0 26 PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity 5 d1bxsa_ 100.0 30 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 6 c2ve5H_ 100.0 32 PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa 7 d1o9ja_ 100.0 28 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 8 c3iwkB_ 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) 9 c3rosA_ 100.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent aldehyde dehydrogenase; PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 lactobacillus acidophilus 10 c2d4eB_ 100.0 31 PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 11 c2w8qA_ 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. 12 c3r31A_ 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens 13 c2o2qA_ 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp 14 c3rh9A_ 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei 15 c3ifgH_ 100.0 35 PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 16 d1ag8a_ 100.0 30 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 17 c3k2wD_ 100.0 30 PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c 18 d1o04a_ 100.0 30 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 19 c3qanB_ 100.0 30 PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans 20 c3b4wA_ 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 21 c3jz4C_ not modelled 100.0 32 PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme 22 d1uzba_ not modelled 100.0 28 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 23 d1wnda_ not modelled 100.0 30 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 24 c1t90B_ not modelled 100.0 29 PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis 25 c3ek1C_ not modelled 100.0 31 PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 26 d1euha_ not modelled 100.0 30 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 27 c3i44A_ not modelled 100.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution 28 c3hazA_ not modelled 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein 29 c2hg2A_ not modelled 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase a; PDBTitle: structure of lactaldehyde dehydrogenase 30 d1ky8a_ not modelled 100.0 28 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 31 c3prlD_ not modelled 100.0 30 PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125 32 c3ju8B_ not modelled 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase; PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa. 33 c3pqaA_ not modelled 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661 34 d1bi9a_ not modelled 100.0 31 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 35 c2vroB_ not modelled 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400 36 d1ad3a_ not modelled 100.0 23 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 37 c3r64A_ not modelled 100.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:nad dependent benzaldehyde dehydrogenase; PDBTitle: crystal structure of a nad-dependent benzaldehyde dehydrogenase from2 corynebacterium glutamicum 38 d1ez0a_ not modelled 100.0 22 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 39 c3lnsD_ not modelled 100.0 23 PDB header:oxidoreductase Chain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct 40 c3v4cB_ not modelled 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+); PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021 41 c3k9dD_ not modelled 100.0 18 PDB header:oxidoreductase Chain: D: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e 42 d1o20a_ not modelled 100.0 18 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 43 c3my7A_ not modelled 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase; PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a 44 c2h5gA_ not modelled 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase 45 d1vlua_ not modelled 100.0 18 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 46 c1vluB_ not modelled 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase; PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution 47 d1k75a_ not modelled 98.4 17 Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD 48 d2bona1 not modelled 61.3 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 49 d1a9xa2 not modelled 60.9 20 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain 50 c2yvqA_ not modelled 60.1 17 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 51 c2qyxB_ not modelled 46.2 5 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein mj0159; PDBTitle: crystal structure of uncharacterized protein mj0159 from2 methanocaldococcus jannaschii 52 d1uz5a3 not modelled 42.5 18 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 53 d2jgra1 not modelled 37.5 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 54 c2l69A_ not modelled 36.9 14 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 55 d2p1ra1 not modelled 34.5 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 56 d1wo8a1 not modelled 30.2 10 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 57 d1u0ta_ not modelled 28.3 18 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 58 c2bonB_ not modelled 28.2 17 PDB header:transferase Chain: B: PDB Molecule:lipid kinase; PDBTitle: structure of an escherichia coli lipid kinase (yegs) 59 d1ycga1 not modelled 25.7 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 60 d1k99a_ not modelled 21.8 8 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 61 d2ioja1 not modelled 21.4 8 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 62 c2crjA_ not modelled 20.3 11 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 63 c1uz5A_ not modelled 19.9 18 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 64 c3fghA_ not modelled 19.8 8 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 65 c3v4gA_ not modelled 19.6 17 PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6 66 c2co9A_ not modelled 19.0 8 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 67 c3jtpB_ not modelled 18.8 17 PDB header:protein binding Chain: B: PDB Molecule:adapter protein meca 1; PDBTitle: crystal structure of the c-terminal domain of meca 68 c2ec4A_ not modelled 18.7 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the uas domain from human fas-2 associated factor 1 69 d1j3xa_ not modelled 18.5 8 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 70 c1j3xA_ not modelled 18.5 8 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 71 c2g4rB_ not modelled 17.9 12 PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga 72 c2eqzA_ not modelled 17.8 8 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 73 c2q9uB_ not modelled 17.6 17 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 74 d1xxaa_ not modelled 17.0 30 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 75 d2g2ca1 not modelled 16.7 12 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 76 c2ze3A_ not modelled 16.3 15 PDB header:isomerase Chain: A: PDB Molecule:dfa0005; PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus 77 d1mkza_ not modelled 15.9 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 78 d1wu2a3 not modelled 15.8 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 79 c2cs1A_ not modelled 15.8 11 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 80 d1t95a1 not modelled 15.6 35 Fold:RuvA C-terminal domain-like Superfamily:Hypothetical protein AF0491, middle domain Family:Hypothetical protein AF0491, middle domain 81 c2yukA_ not modelled 15.2 15 PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog 82 d1j46a_ not modelled 15.0 8 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 83 c3fa4D_ not modelled 14.7 15 PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form 84 d1xi8a3 not modelled 14.0 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 85 d1s7ia_ not modelled 13.8 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 86 d1hsma_ not modelled 13.4 16 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 87 d2lefa_ not modelled 13.4 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 88 d1y5ea1 not modelled 13.4 22 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 89 c3labA_ not modelled 13.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative kdpg (2-keto-3-deoxy-6-phosphogluconate) PDBTitle: crystal structure of a putative kdpg (2-keto-3-deoxy-6-2 phosphogluconate) aldolase from oleispira antarctica 90 d2ftsa3 not modelled 12.9 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 91 c2is8A_ not modelled 12.6 10 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 92 d1lwma_ not modelled 12.5 8 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 93 c3u2bC_ not modelled 12.3 3 PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna 94 d1v64a_ not modelled 11.8 5 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 95 d2nqra3 not modelled 11.8 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 96 c3lo3E_ not modelled 11.5 16 PDB header:structure genomics, unknown function Chain: E: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown2 protein from colwellia psychrerythraea 34h. 97 c2qiwA_ not modelled 11.5 9 PDB header:transferase Chain: A: PDB Molecule:pep phosphonomutase; PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution 98 c1hmfA_ not modelled 11.5 14 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 99 d1hmfa_ not modelled 11.5 14 Fold:HMG-box Superfamily:HMG-box Family:HMG-box

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0