Job Description P76149 Confidence 14.72% Date Thu Jan 5 12:19:43 GMT 2012 Rank 83 Aligned Residues 197 % Identity 15% Template c3fa4D_ PDB info PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form Resolution 2.18 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	W	Q	V	M	R	G	A	V	P	I	I	L	A	G	N	G	Y	L	L	K	H	A	P	N	V	M	G	C	A	Q	L	I	A	Q	V	F	K	D	A	G	I	P	Q	G	V	Y	G	W	L	N	A	D	N	D	G	V	S	Q	M	I	K	D	S	R	I	A	A	V	T	V	T	G	S	V	R	A	G	A
Query Conservation
Alig confidence																																.	.	.	.												.	.	.	.
Template Conservation																																.	.	.	.												.	.	.	.
Template Sequence		P	M	V	T	A	A	T	S	L	R	R	A	L	E	N	P	D	S	F	I	V	A	P	G	V	Y	D	G	L	S	.	.	.	.	A	R	V	A	L	S	A	G	F	D	A	.	.	.	.	L	Y	M	T	G	A	G	T	A	A	S	V	H	G	Q	A	D	L	G	I	C	T	L	N	D	M	R	A	N	A	E
Template Known Secondary structure																S	T	T										S				.	.	.	.						T	T	T		S		.	.	.	.													T	S	S		S	S	S
Template Predicted Secondary structure																																.	.	.	.												.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	A	Q	A	G	A	A	L	K	K	C	V	L	E	L	G	G	S	D	P	F	I	V	L	N	D	A	D	L	E	L	A	V	K	A	A	V	A	G	R	Y	Q	N	T	G	Q	V	C	A	A	A	K	R	F	I	I	E	E	G	I	A	S	A	F	T	E	R	F	V	A	A	A	A	A	L	K	M	G
Query Conservation
Alig confidence																									.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	S	N	I	S	P	S	T	P	V	I	A	D	A	D	T	G	Y	G	G	P	I	.	.	.	.	.	.	M	V	A	R	T	T	E	Q	Y	S	R	S	.	.	.	.	.	.	.	.	.	.	G	V	A	A	F	H	I	E	D	Q	V	Q	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	T	T	S							T	T		S	S	S			.	.	.	.	.	.												T	.	.	.	.	.	.	.	.	.	.	T									B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.											.	110	.	.	.	.	.	.	.	.	.	120	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	R	D	E	E	N	A	L	G	P	M	A	R	F	D	L	R	D	E	L	H	H	Q	V	E	K	T	L	A	Q	G	A	R	L	L	L	G	G	E	K	M	A	G	A	G	N	Y	Y	P	P	T	V	L	A	N	V	T	P	E	M	T	A	F	R	E	E	M	F	G	P	V	A	A	I	T	I	A	K	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	I	L	V	D	T	D	T	Y	V	T	R	I	R	A	A	V	Q	A	R	Q	R	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	I	V	V	I	A	R	T	D	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		B																					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																																						.	.	.	.	.	.	160	.	.	.	.
							379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.				.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure		.	.	.	.	.																					.	.	.
Query SS confidence		.	.	.	.	.																					.	.	.
Query Sequence		.	.	.	.	.	A	E	H	A	L	E	L	A	N	D	S	E	F	G	L	S	A	T	I	F	.	.	.	T	T	D	E	T	Q	A	R	Q	M	A	A	R	L	E	C	G	G	V	F	I	N
Query Conservation		.	.	.	.	.																					.	.	.
Alig confidence		.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		L	Q	T	H	G	Y	E	E	S	V	A	R	L	R	A	A	R	D	A	G	A	D	V	G	F	L	E	G	I	T	S	R	E	M	A	R	Q	V	I	Q	D	L	A	G	W	P	L	L	L	N
Template Known Secondary structure																					T		S					T	T														T	T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions