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Job DescriptionP28722
Confidence95.12%DateThu Jan 5 11:45:14 GMT 2012
Rank26Aligned Residues85
% Identity18%Templatec1z9oB_
PDB info PDB header:protein binding/lipid binding proteinChain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MVPET. SVLLVDE. . . KRGEASINIKNTDDHPSLLYTTIVDLPESNKSIRLIPTQPVIRVEAGQVQQVRFLLQAT. . . VP
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Template Sequence  LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPR. . . . . . RYCVRPNSGVIDPGSIVTVSVMLQPFDYDPN
Template Known Secondary structure  SSSSS

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GG......GSS
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   8.10.........20.........30.........40.........50 .........60.........70.........80.
 
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Query Sequence  LQSEELKRVTFEGIPPKD
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Template Sequence  EKSKHKFMVQTIFAPPSD
Template Known Secondary structure  S








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   82.......90.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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