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Job Description | P28722 | Confidence | 95.12% | Date | Thu Jan 5 11:45:14 GMT 2012 |
Rank | 26 | Aligned Residues | 85 |
% Identity | 18% | Template | c1z9oB_ |
PDB info |
PDB header:protein binding/lipid binding protein | Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; |
PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif
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Resolution | 1.90 Å |
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Query Sequence |   |
M | V | P | E | T | . |
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K | R | G | E | A | S | I | N | I | K | N | T | D | D | H | P | S | L | L | Y | T | T | I | V | D | L | P | E | S | N | K | S | I | R | L | I | P | T | Q | P | V | I | R | V | E | A | G | Q | V | Q | Q | V | R | F | L | L | Q | A | T | . |
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V | P |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | V | L | D | P | P | S | D | L | K | F | K | G | P | F | T | D | V | V | T | T | N | L | K | L | Q | N | P | S | D | R | K | V | C | F | K | V | K | T | T | A | P | R | . |
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R | Y | C | V | R | P | N | S | G | V | I | D | P | G | S | I | V | T | V | S | V | M | L | Q | P | F | D | Y | D | P | N |
Template Known Secondary structure |   |
S |  |  |  | S | S | S |  |  |  |  |  | S |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | |
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95 | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
L | Q | S | E | E | L | K | R | V | T | F | E | G | I | P | P | K | D |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
E | K | S | K | H | K | F | M | V | Q | T | I | F | A | P | P | S | D |
Template Known Secondary structure |   |
S |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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