Job Description P28722 Confidence 8.88% Date Thu Jan 5 11:45:14 GMT 2012 Rank 86 Aligned Residues 132 % Identity 13% Template c1l5gA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha v; PDBTitle: crystal structure of the extracellular segment of integrin avb3 in2 complex with an arg-gly-asp ligand Resolution 3.20 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																									.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query Sequence		E	A	S	I	N	I	K	N	T	D	D	H	P	S	L	L	Y	T	T	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	P	E	S	N	K	S	I	R	L	I	P	T	Q	P	V	I	R	V	E	A	G	Q	V	Q	Q	V	R	F	L	L	.	.	Q
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.														.	.
Template Conservation																																																															.	.	.
Template Sequence		T	L	I	V	K	A	Q	N	Q	G	E	G	A	Y	E	A	E	L	I	V	S	I	P	L	Q	A	D	F	I	G	V	V	R	N	N	E	A	L	A	R	L	S	C	A	F	K	T	E	N	Q	T	R	Q	V	V	C	D	L	G	N	P	.	.	.	M	K	A	G	T	Q	L	L	A	G	L	R	F	S	V	H
Template Known Secondary structure											S	S		B	S	S									S	S									S		S	S	S	B										S	S	S									S	S	.	.	.	B		T	T					B
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.				.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																		.	.	.	150	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	V	P	L	Q	S	E	E	L	K	R	V	T	F	E	G	I	P	P	K	D	D	K	S	S	R	V	T	V	S	I	R	Q	D	L	P	V	L	I	H	P	A	S	L	P	E	E	R	E	T	W	K	F	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	R	K	N	G	D	Q
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		Q	Q	S	E	M	D	T	S	V	K	F	D	L	Q	I	Q	S	S	N	L	F	D	K	V	S	P	V	V	S	H	K	V	D	L	A	V	L	A	A	V	E	I	R	G	V	S	S	P	D	H	V	F	L	P	I	P	N	W	E	H	K	E	N	P	E	T	E	E	D	V	G	P	V	V	Q	H	I	.	.	.
Template Known Secondary structure				T	T			S											S		S	S	S		B																							S	S	S				T	T		S	S					S	S			S												.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	I	S	N	P	S	N	Y	V	V	R	M	T	L	Q	F	K	T	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	E	L	R	N	N	G	P	S	S	F	S	K	A	M	L	H	L	Q	W	P
Template Known Secondary structure								S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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