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Job DescriptionP76503
Confidence99.96%DateThu Jan 5 12:23:40 GMT 2012
Rank37Aligned Residues293
% Identity22%Templatec3lrfA_
PDB info PDB header:transferaseChain: A: PDB Molecule:beta-ketoacyl synthase; PDBTitle: crystal structure of beta-ketoacyl synthase from brucella2 melitensis
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12....... 20...... ...30........ .40......
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Query Sequence  GDRIAIVS. GLRTPFA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . RQATAFHGIPAV. . . . . . . . . . . . . . . DLGKMVVG
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Template Sequence  MRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGAPDIDIESLVDRRAMRFHGRGTAWNHIAMD
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BTTBSST



T
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S
TTGGGG

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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   47..50.........60 .........70 .........80.........90......
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Query Sequence  ELLARSEIPAEVIE. . . . QLVFGQVVQM. . . . . . . . . . . . . . . . . . . . . . . . . . PEAPNIAREIVLGTGMNVHTDAYSVS
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Template Sequence  QAIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKI. . KGINYSIS
Template Known Secondary structure  T

SSTTSS


GGGG
TT
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   81........90.........100.........110.........120.........130.........140.........150 ........
 
   97..100.........110.........120.........130.........140.........150.........160.........170......
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Query Sequence  RACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVA
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Template Sequence  SACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVLFDAMG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
GGGTTS
S


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   159160.........170.........180.........190.........200...
 
   177..180.........190.........200.........210.........220.........230.........240.........250......
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Query Sequence  EYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AMSSKYNDTPSTAS
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B

TTTTSGGGS
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   204.....210.......
 
   257..260.........270.........280.........290.........300.........310. ........320.........330....
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Query Sequence  RPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDV. . WQDMLLGPAWSTPLALERAGLTM
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Template Sequence  RAYDKNRDGFV. . . . . . . IAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAPSGEGAIRCMKMALSTV. . . T
Template Known Secondary structure 
TTBTT

SB
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TT





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SSS

STT
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   218.220........ .230.........240.........250.........260.........270.........280...... .
 
   335....340....... ..350.........360.........370......... 380......... 390.........400........
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Query Sequence  SDLTLIDMHEAFA. . . . AQTLANIQLLGSERFAREALGRAHATGEVDDS. KFNVLGGSIA. YGHPFAATGARMITQTLHE
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Template Sequence  SKIDYINPHATSTPAGDAPEIEAIRQI. . . . . . . . . . . . . . . . . . FGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLM
Template Known Secondary structure  S






S
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SGGGS

B

T
B
GGG
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   288.290.........300.........310.... .....320.........330.........340.........
 
   409410. ........420.........430.....
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Query Sequence  LRR. . . . . . . . . . . . . . . . . . . . . . . . . . . . RGGGFGLVTACAAGGLGAAMVLEA
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Template Sequence  MQNNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQR
Template Known Secondary structure  T


TT
SSB
GGGTTS
B
SS
S



TTT
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   350.........360.........370.........380.........390.........400....
 
Download:Text version

No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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