Job Description P76503 Confidence 99.70% Date Thu Jan 5 12:23:40 GMT 2012 Rank 73 Aligned Residues 253 % Identity 18% Template c2f9aA_ PDB info PDB header:transferase Chain: A: PDB Molecule:3-hydroxy-3-methylglutaryl coenzyme a synthase 1; PDBTitle: hmg-coa synthase from brassica juncea in complex with f-244 Resolution 2.51 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		R	T	P	F	A	R	Q	A	T	A	F	H	G	I	P	A	V	D	L	G	K	M	V	V	G	E	L	L	A	R	S	E	I	P	A	E	V	I	E	Q	L	V	F	G	Q	V	V	Q	M	P	E	A	P	N	I	A	R	E	I	V	L	G	T	G	M	N	.	.	V	H	T	D	A	Y	S	V	S	R	A	C
Query Conservation																																																																				.	.
Alig confidence																																																																				.	.
Template Conservation
Template Sequence		G	L	G	Q	D	C	L	A	F	C	T	E	L	E	D	V	I	S	M	S	F	N	A	V	T	S	L	L	E	K	Y	K	I	D	P	K	Q	I	G	R	L	E	V	G	S	E	T	V	I	D	K	S	K	S	I	K	T	F	L	M	Q	L	F	E	K	C	G	N	T	D	V	E	G	V	D	S	T	N	A	C
Template Known Secondary structure		T	T										T	T																		T	T			G	G	G												S		S	S	S							T					T	T	T					B						S	G	G
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		A	T	S	F	Q	A	V	A	N	V	A	E	S	L	M	A	G	T	.	.	I	R	A	G	I	A	G	G	A	D	S	S	S	V	L	P	I	G	V	S	K	K	L	A	R	V	L	V	D	V	N	K	A	R	T	M	S	Q	R	L	K	L	F	S	R	L	R	L	R	D	L	M	P	V	P	P	A	V	A	E
Query Conservation																				.	.
Alig confidence																				.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	G	T	A	A	L	L	N	C	V	N	W	V	E	S	N	S	W	D	G	R	Y	G	L	V	I	C	T	D	S	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G														T	S	T	T			S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	T	G	L	R	M	G	D	T	A	E	Q	M	A	K	T	Y	G	I	T	R	E	Q	Q	D	A	L	A	H	R	S	H	Q	R	A	A	Q	A	W	S	D	G	K	L	K	E	E	V	M	T	A	F	I	P	P	Y	K	Q	P	L	V	E	D	N	N	I	R	G	N	S	S	L	A	D	Y	A	K	L	R
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	F	D	R	K	H	G	T	V	T	A	A	N	S	T	P	L	T	D	G	A	A	A	V	I	L	M	T	E	S	R	A	K	E	L	G	L	V	P	L	G	Y	L	R	S	Y	A	F	T	A	I	D	V	W	Q	D	M	L	L	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Y	A	E	G	P	A	R	P	T	G	G	A	A	A	I	A	M	L	I	G	.	.	.	.	.	.	.	.	P	D	A	P	I	V	F	E	S	K	L	R	G	S	H	M	A	H	V	Y	D	F	Y	K	P	N	L	A	S	E	Y	P	V	V	D	G	K	L	S	Q	T	C	Y	L
Template Known Secondary structure		.	.	.	.	.	.	.	.			S	S	T	T	G	G	G												.	.	.	.	.	.	.	.	S	S		S																	S						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template SS confidence
										151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170									.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
											320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																																							.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																																							.
Query Sequence		.	.	.	.	.	.	.	.	.	A	W	S	T	P	L	A	L	E	R	A	G	L	T	M	S	D	L	T	L	I	D	M	H	E	A	F	A	A	Q	T	L	A	N	I	Q	L	L	G	S	E	R	F	A	R	E	A	L	G	R	A	H	A	T	G	E	V	D	D	S	K	F	N	V	L	G	G	S	I	A	.
Query Conservation		.	.	.	.	.	.	.	.	.																																																																							.
Alig confidence		.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	L	D	S	C	Y	K	H	L	C	N	K	F	E	K	L	E	G	K	E	F	S	I	N	D	A	D	Y	F	V	F	H	S	P	Y	N	K	L	V	Q	K	S	F	A	R	L	L	Y	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	V	Q	P	T	T	L	V	P
Template Known Secondary structure																				S	S				G	G	G		S							S	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	G	G	G
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.																				.	.	.	.	270	.	.	.	.	.
				390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure		.	.																				.
Query SS confidence		.	.																				.
Query Sequence		.	.	Y	G	H	P	F	A	A	T	G	A	R	M	I	T	Q	T	L	H	E	.	L	R	R	R	G	G	G	F	G	L	V	T	A	C	A	A	G	G	L	G	A	A	M	V	L	E	A	E
Query Conservation		.	.																				.
Alig confidence		.	.																				.
Template Conservation
Template Sequence		K	Q	V	G	N	M	Y	T	A	S	L	Y	A	A	F	A	S	L	V	H	N	K	H	S	D	L	A	G	K	R	V	V	M	F	S	Y	G	S	G	S	T	A	T	M	F	S	L	R	L	C
Template Known Secondary structure								G	G	G														T	T	T		T	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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