Return to main results Retrieve Phyre Job Id

Job DescriptionP76503
Confidence99.96%DateThu Jan 5 12:23:40 GMT 2012
Rank35Aligned Residues292
% Identity21%Templatec2buiC_
PDB info PDB header:synthaseChain: C: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase i; PDBTitle: e.coli beta-ketoacyl (acyl carrier protein) synthase i in2 complex with octanoic acid, 120k
Resolution2.4 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12....... 20.........30..... ....40......
Predicted Secondary structure 

.









............................................
Query SS confidence 







.















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .










Query Sequence  GDRIAIVS. GLRTPFARQATAFHGI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PAVDLGKMVVG
Query Conservation     
 


.   



   
     ............................................   


  
  
Alig confidence 







.















............................................










Template Conservation 



 


 
  

 
         
  
   
                          
             
 
 

 
Template Sequence  MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSME
Template Known Secondary structure 


BTTBSST



TT
S







TTSS
TT

Template Predicted Secondary structure 






































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   47..50.........60 .........70. ........80.........90....
Predicted Secondary structure 





.....



...........................









Query SS confidence 













. . . . .










. . . . . . . . . . . . . . . . . . . . . . . . . . .






















Query Sequence  ELLARSEIPAEVIE. . . . . QLVFGQVVQMP. . . . . . . . . . . . . . . . . . . . . . . . . . . EAPNIAREIVLGTGMNVHTDAYS
Query Conservation   

 



    

..... 
  
      ...........................         
   

        
Alig confidence 













.....










...........................














..





Template Conservation 


 



           

  
                                   
  
  

   

.. 
   
Template Sequence  QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKI. . HGVNYS
Template Known Secondary structure  T

TT
TT
SS

TSTT
S
STTTTTT
..
S

Template Predicted Secondary structure 

























..





Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.. ......
 
   95....100.........110.........120.........130.........140.........150.........160.........170....
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  VSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPA
Query Conservation 
   



  

  
   
 

    


 
 
  
                                            
Alig confidence 














































.................................
Template Conservation 
  

 
 
 

  
   
  
  
  



 
              .................................
Template Sequence  ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


GGGTTS
S


T.................................
Template Predicted Secondary structure 

















.................................
Template SS confidence 















































































   159160.........170.........180.........190.........200.....
 
   175....180.........190.........200.........210.........220.........230.........240.........250....
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  VAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYA
Query Conservation           
   
       
 
 
    

  
   
  
           
            
           
 
Alig confidence  ....................................................................











Template Conservation  .................................................................... 
          
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ALSTKYNDTPEK
Template Known Secondary structure  ....................................................................
B

S
TTS
Template Predicted Secondary structure  ....................................................................







Template SS confidence 















































































   206...210.......
 
   255....260.........270.........280.........290.........300.........310..... ....320.........330..
Predicted Secondary structure 


































..



Query SS confidence 




























































. .
















Query Sequence  KLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDM. . LLGPAWSTPLALERAGL
Query Conservation   
 
         
        







 
   
  

  
 
 
 
            ..      
   
   


Alig confidence 












.......








































..
















Template Conservation    



    
  ....... 



  



    
  

  
 
 
 
     
      
       
   

  
  
Template Sequence  ASRTYDAHRDGFV. . . . . . . IAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGVDT
Template Known Secondary structure 

TTBTT

SB
.......BB
TT





S
SSS

STT

S
Template Predicted Secondary structure 










.......


















Template SS confidence 















































































   218.220.........230 .........240.........250.........260.........270.........280.........290
 
   333......340........ .350.........360.........370.........380......... 390.........400.......
Predicted Secondary structure 





....





























.

Query SS confidence 















. . . .








































.

















Query Sequence  TMSDLTLIDMHEAFAA. . . . QTLANIQLLGSERFAREALGRAHATGEVDDSKFNVLGGSIA. YGHPFAATGARMITQTLH
Query Conservation     


  

 
 
  ....  
   
 

    
        
        

  

  
. 


 



     
   
Alig confidence  ...












....








..................





.






.

















Template Conservation  ...


 
  




   
  
  

   ..................

    . 
 
 
   

   


   
    
Template Sequence  . . . PIDYLNSHGTSTPVGDVKELAAIREV. . . . . . . . . . . . . . . . . . FGDKSP. AISATKAMTGHSLGAAGVQEAIYSLL
Template Known Secondary structure  ...

S



S
..................TT


.
T
B
GGG
Template Predicted Secondary structure  ...






..................




.







Template SS confidence 















































































   291........300.........310...... ...320.. .......330.........340........
 
   408.410. ........420.........430.....
Predicted Secondary structure  ...........................









Query SS confidence 



. . . . . . . . . . . . . . . . . . . . . . . . . . .























Query Sequence  ELRR. . . . . . . . . . . . . . . . . . . . . . . . . . . RGGGFGLVTACAAGGLGAAMVLEA
Query Conservation 


 ...........................  
  

     


 
   


 
Alig confidence 



...........................























Template Conservation   
  
 


               
            
  
 
 

 
  


  
Template Sequence  MLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRK
Template Known Secondary structure  T





SSB
GGGTTS
B

S




TTT
Template Predicted Secondary structure 




































Template SS confidence 






















































   349350.........360.........370.........380.........390.........400...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions