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Job DescriptionP76503
Confidence99.68%DateThu Jan 5 12:23:40 GMT 2012
Rank76Aligned Residues244
% Identity17%Templatec1x9eB_
PDB info PDB header:lyaseChain: B: PDB Molecule:hmg-coa synthase; PDBTitle: crystal structure of hmg-coa synthase from enterococcus2 faecalis
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.........70.........80.........90.........100.........110..
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Query Sequence  HGIPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAES
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Template Sequence  ISQDIVTFAANAAEAILTKE. . DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAGLQLAKNH
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TT

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   47..50.........60...... ...70.........80.........90.........100.........110.........120....
 
   113......120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  LMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMA
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Template Sequence  VALHPDKKVLVVAADIAKYGLNSGGEPT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  STT



TT
SSGGG....................................................
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   125....130.........140.........150..
 
   193......200.........210.........220.........230.........240.........250.........260.........270..
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Query Sequence  KTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS
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   273......280.........290.........300.........310...... ...320.........330.........340
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Query Sequence  TPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDML. . . . . . . . . . . . LGPAWSTPLALERAGLTMSDLTLI
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Template Sequence  . . QGAGAVAMLVASEPRILALKEDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDAL
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   153......160.........170.........180.........190.........200.........210.........220.........230
 
   341........350.........360.........370.........380......... 390.........400....
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Query Sequence  DMHEAFAAQTLANIQLLGSERFAREALGRAHATGEVDDSKFNVLGGSIA. . . . . . . . . . . . . . . . YGHPFAATGARMITQ
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Template Sequence  AFHIPYTKMGKKALLAK. . . . . . . . . . . . . . . . . . . . . . . ISDQTEAEQERILARYEESIIYSRRVGNLYTGSLYLGLIS
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SS.......................STTS
TTTGGGT


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   231........240....... ..250.........260.........270.........280.......
 
   405....410 .........420.........430.....
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Query Sequence  TLHELR. RRGGGFGLVTACAAGGLGAAMVLEA
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Template Sequence  LLENATTLTAGNQIGLFSYGSGAVAEFFTGEL
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TT

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   288.290.........300.........310.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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