Return to main results Retrieve Phyre Job Id

Job DescriptionP76503
Confidence99.97%DateThu Jan 5 12:23:40 GMT 2012
Rank34Aligned Residues271
% Identity24%Templatec1j3nB_
PDB info PDB header:transferaseChain: B: PDB Molecule:3-oxoacyl-(acyl-carrier protein) synthase ii; PDBTitle: crystal structure of 3-oxoacyl-(acyl-carrier protein)2 synthase ii from thermus thermophilus hb8
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60 .........70.. .......80......
Predicted Secondary structure 





....




..........................




Query SS confidence 























. . . .











. . . . . . . . . . . . . . . . . . . . . . . . . .













Query Sequence  AVDLGKMVVGELLARSEIPAEVIE. . . . QLVFGQVVQMPE. . . . . . . . . . . . . . . . . . . . . . . . . . APNIAREIVLGTGM
Query Conservation    


  
   

 



    

.... 
  
       ..........................        
   

Alig confidence 























....











..........................













Template Conservation     
 
 
   

 


         
 

  
                                  
  
  

    
Template Sequence  FVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGF
Template Known Secondary structure  TT

GGGS
GGG
SS


TTSS
TTSTTT
Template Predicted Secondary structure 























Template SS confidence 















































































   71........80.........90.........100.........110.........120.........130.........140.........150
 
   87..90.........100.........110.........120.........130.........140.........150.........160......
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  NVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLR
Query Conservation          
   



  

  
   
 

    


 
 
  
                                    
Alig confidence  ..




























































.................
Template Conservation  .. 

  

  



 
 

  
   
  
  
 




 
                
     .................
Template Sequence  . . TGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNE. . . . . . . . . . . . . . . . .
Template Known Secondary structure  ..
S




GGGTTS
S


STT
B


TT.................
Template Predicted Secondary structure  ..




























.................
Template SS confidence 















































































   151........160.........170.........180.........190.........200.........210.
 
   167..170.........180.........190.........200.........210.........220.........230.........240......
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  DLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYKQPLVEDNNIRG
Query Conservation                   
   
       
 
 
    

  
   
  
           
            
     
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   247..250.........260.........270.........280.........290.........300.........310. ........320..
Predicted Secondary structure 

































....




Query SS confidence 
































































. . . .










Query Sequence  NSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDV. . . . WQDMLLGPAWS
Query Conservation        
  
 
         
        







 
   
  

  
 
 
 
        ....          
Alig confidence  ....
















.......




































....










Template Conservation  ....      



    
  ....... 



  



    
   
  
 
 
 
     
        
       
Template Sequence  . . . . EPEKASRPFTLSRDGFV. . . . . . . MGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALA
Template Known Secondary structure  ....SGGGS

TTBTT


B
.......BB
T





S
SS


TT
Template Predicted Secondary structure  ....














.......




















Template SS confidence 















































































   212.......220........ .230.........240.........250.........260.........270.........280
 
   323......330.........340........ .350.........360.........370.........380.... ..... 390......
Predicted Secondary structure 








....



























.

.

Query SS confidence 

























. . . .



































.




.






Query Sequence  TPLALERAGLTMSDLTLIDMHEAFAA. . . . QTLANIQLLGSERFAREALGRAHATGEVDDSKFNVL. GGSIA. YGHPFAA
Query Conservation     
   


   


  

 
 
  ....  
   
 

    
        
        

  .

  
. 


 

Alig confidence 

























....








..................








.




.






Template Conservation 
  

  


   

  
  




   
  
  

   ..................
        
 
 
   

   
Template Sequence  MARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRV. . . . . . . . . . . . . . . . . . FGDHAKRLMVSSTKSMIGHLLGA
Template Known Secondary structure  T

GGG







..................GGGGGT

T
B
GGG
Template Predicted Secondary structure 














..................










Template SS confidence 















































































   281........290.........300.........310......... 320.........330.........340..
 
   397..400.........410 .........420.........430.....
Predicted Secondary structure  ..........................









Query SS confidence 













. . . . . . . . . . . . . . . . . . . . . . . . . .
























Query Sequence  TGARMITQTLHELR. . . . . . . . . . . . . . . . . . . . . . . . . . RRGGGFGLVTACAAGGLGAAMVLEA
Query Conservation 

     
   


..........................   
  

     


 
   


 
Alig confidence 













..........................
























Template Conservation 

   
  
 
 
    


                          


 
 
 

 
  


  
Template Sequence  AGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVPEPREAKVDYALSNSFAFGGHNAVLAFKR
Template Known Secondary structure  T


TTTTSB
TT

SB

SS



S
TTS
Template Predicted Secondary structure 




































Template SS confidence 
































































   343......350.........360.........370.........380.........390.........400.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions