Job Description P27278 Confidence 96.72% Date Thu Jan 5 11:43:37 GMT 2012 Rank 270 Aligned Residues 105 % Identity 16% Template c4a2iV_ PDB info PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor Resolution 16.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	E	L	H	I	I	M	G	F	D	D	T	R	D	R	A	L	F	E	D	S	A	M	S	Q	Q	P	T	V	P	D	R	L	R	W	L	L	Q	T	F	K	Y	Q	K	N	I	R	I	H	A	F	N	E	E	G	M	E	P	Y	P	H	G	W	D	V	W	S	N	G	I	K	K	F	M	A	E	K	G	I
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.											.																																								.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.											.																																								.	.	.	.	.	.
Template Sequence		I	D	Q	I	V	I	V	S	A	I	L	P	.	.	.	.	.	.	.	.	.	.	.	.	E	L	S	L	N	I	I	D	R	Y	.	L	V	G	C	E	T	L	Q	V	E	P	L	I	V	L	N	K	I	D	L	L	D	D	E	G	M	D	F	V	N	E	Q	M	D	I	Y	R	N	I	.	.	.	.	.	.
Template Known Secondary structure											S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	T										.								T										G	G	G																		T	T	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.											.																																								.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.													.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	D	L	I	Y	T	S	E	E	A	D	A	P	Q	Y	M	E	H	L	G	I	E	T	V	L	V	D	P	K	R	T	F	M	S	I	S	G	A	Q	I	R	E	N	P	F	R	Y	W	E	Y	I	P	T	E	V	K	P	F	F	V	R	T	V	A	I	L	G	G	E	S	S	G	K	S	T	L	V	N	K
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		G	Y	R	V	L	M	V	S	S	H	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	L	K	P	L	E	E	A	L	T	G	.	.	.	.	.	.	.	R	I	S	I	F	A	G	Q	S	G	V	G	K	S	S	L	L	N	A
Template Known Secondary structure		T							B	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T									T	T	.	.	.	.	.	.	.	S								T	T	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.																															.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		251
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		235

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions