Job Description P27278 Confidence 99.46% Date Thu Jan 5 11:43:37 GMT 2012 Rank 41 Aligned Residues 178 % Identity 13% Template c3lv8A_ PDB info PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp Resolution 1.80 Å

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		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.											.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	T	V	A	I	L	G	G	E	S	S	G	K	S	T	L	V	N	K	L	A	N	I	F	N	T	T	S	A	W	E	.	.	.	.	.	.	.	.	.	.	Y	G	R	D	Y	V	F	S	H	L	G	G	D	E	I	A	L	Q	Y	S	D	Y	D	K	I	A	L	G	H	A	Q	Y	I	D	F	A	V	K
Query Conservation																																		.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	F	I	V	I	E	G	L	E	G	A	G	K	S	T	A	I	Q	V	V	V	E	T	L	Q	Q	N	G	I	D	H	I	T	R	T	R	E	P	G	G	T	L	L	A	E	K	L	R	A	L	V	K	E	E	H	P	G	E	E	L	Q	D	I	T	E	L	L	L	V	Y	A	A	R	V	Q	L	V	E	N
Template Known Secondary structure										S	T	T	S																T	T									S	S		S	S												S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		301							.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.					.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.																																					.	.	.	.														.	.
Query SS confidence			.	.	.	.	.	.																																					.	.	.	.														.	.
Query Sequence		Y	.	.	.	.	.	.	A	N	K	V	A	F	I	D	T	D	F	V	T	T	Q	A	F	C	K	K	Y	E	G	R	E	H	P	F	V	Q	A	L	I	D	E	Y	.	.	.	.	R	F	D	L	V	I	L	L	E	N	N	T	P	.	.	W	V	A	D	G	L	R	S	L	G	S	S	V	D	R	K	E	F
Query Conservation			.	.	.	.	.	.																																					.	.	.	.														.	.
Alig confidence			.	.	.	.	.	.																																					.	.	.	.														.	.
Template Conservation
Template Sequence		V	I	K	P	A	L	A	R	G	E	W	V	V	G	D	R	H	D	M	S	S	Q	A	Y	Q	G	G	G	R	Q	I	A	P	S	T	M	Q	S	L	K	Q	T	A	L	G	D	F	K	P	D	L	T	L	Y	L	D	I	D	P	K	L	G	L	E	R	E	L	D	R	I	E	K	M	D	I	S	F	F	E	R
Template Known Secondary structure		T							T	T							S									T	T	T	T	T																T	T				S																			T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		Q	N	L	L	V	E	M	L	E	E	N	N	I	E	F	V	R	V	E	.	E	E	D	Y	D	S	R	F	L	R	C	V	E	L	V	R	E	M	M	G	E
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		A	R	E	R	Y	L	E	L	A	N	S	D	D	S	V	V	M	I	D	A	A	Q	S	I	E	Q	V	T	A	D	I	R	R	A	L	Q	D	W	L	S	Q
Template Known Secondary structure														T	T						T	T	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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