Job Description P27278 Confidence 98.68% Date Thu Jan 5 11:43:37 GMT 2012 Rank 92 Aligned Residues 171 % Identity 12% Template c3akcA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8 Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		R	T	V	A	I	L	G	G	E	S	S	G	K	S	T	L	V	N	K	L	A	N	I	F	N	T	T	S	A	W	.	.	E	Y	G	R	D	Y	V	F	S	H	L	G	G	D	E	I	A	L	Q	Y	S	D	Y	D	K	I	A	L	G	H	A	Q	Y	I	D	F	A	V	K	Y	A	N	K	V	A	F	I	D
Query Conservation																																.	.
Alig confidence																																.	.																														.	.
Template Conservation																																																															.	.
Template Sequence		G	I	V	T	I	D	G	P	S	A	S	G	K	S	S	V	A	R	R	V	A	A	A	L	G	V	P	Y	L	S	S	G	L	L	Y	R	A	A	A	F	L	A	L	R	A	G	V	D	P	G	D	E	E	G	L	L	A	L	L	E	G	.	.	L	G	V	R	L	L	A	Q	A	E	G	N	R	V	L	A	D
Template Known Secondary structure		S							S	T	T	S	S													T																					T			T	T												.	.		T							T	T							T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		310	.	.										.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																		.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query SS confidence					.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query Sequence		T	D	F	.	.	.	.	.	.	.	.	.	V	T	T	Q	A	F	C	K	K	Y	E	G	R	E	H	P	F	V	Q	A	L	I	D	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	D	L	V	I	L	L	E	N	N	T	P	.	.	W	V	A	D	G	L	R	S	L	G	S
Query Conservation					.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Alig confidence					.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		G	E	D	L	T	S	F	L	H	T	P	E	V	D	R	V	V	S	A	V	A	R	L	P	G	V	R	A	W	V	N	R	R	L	K	E	V	P	P	P	F	V	A	E	G	R	D	M	G	T	A	V	F	P	E	A	A	H	K	F	Y	L	T	A	S	P	E	V	R	A	W	R	R	A	R	E	R	P	Q	A
Template Known Secondary structure		T				G	G	G	S	S	S												T														T	S		S							S	S							T	T		S																		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.			390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																								.	.	.							.	.
Query SS confidence																								.	.	.							.	.
Query Sequence		S	V	D	R	K	E	F	Q	N	L	L	V	E	M	L	E	E	N	N	I	E	F	.	.	.	V	R	V	E	E	E	.	.	D	Y	D	S	R	F	L	R	C	V	E	L	V	R	E
Query Conservation																								.	.	.							.	.
Alig confidence																								.	.	.							.	.
Template Conservation
Template Sequence		Y	E	E	V	L	R	D	L	L	R	R	D	E	R	D	K	A	Q	S	A	P	A	P	D	A	L	V	L	D	T	G	G	M	T	L	D	E	V	V	A	W	V	L	A	H	I	R	R
Template Known Secondary structure																T	G	G	G					T	T							T	T															T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions