Return to main results Retrieve Phyre Job Id

Job DescriptionP27278
Confidence98.96%DateThu Jan 5 11:43:37 GMT 2012
Rank57Aligned Residues152
% Identity12%Templatec1zuiA_
PDB info PDB header:transferaseChain: A: PDB Molecule:shikimate kinase; PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   232.......240.........250.........260.........270.........280.........290.........300.........310.
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  RTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTD
Query Conservation 
 
 
 
  






   

       
 
  
    
        
   
   
   
   
          

 

 
Alig confidence 





























.
















































Template Conservation 
 
 
 
  







  

  
    
 . 
                                         

    
Template Sequence  QHLVLIGFMGSGKSSLAQELGLALKLEVLD. TDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGG
Template Known Secondary structure 
S
TTS
T
.TS

TT
SS


T
Template Predicted Secondary structure 









.















Template SS confidence 















































































   2.......10.........20.........30. ........40.........50.........60.........70.........80
 
   312.......320.........330.........340.........350 .........360.........370.........380.....
Predicted Secondary structure 













......














Query SS confidence 






































. . . . . .


































Query Sequence  FVTTQAFCKKYEGREHPFVQALIDEYRFDLVILLENNTP. . . . . . WVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVR
Query Conservation     
  
                    






     ......   

 
       
      
   
       
 
Alig confidence 



.................

















......




























.




Template Conservation      .................            
         
                              .    
Template Sequence  GIVM. . . . . . . . . . . . . . . . . HENLKGLGTTFYLKMDFETLIKRLNQREKRPLLNNLTQAKELFEKRQALYEKN. ASFII
Template Known Secondary structure  TGGG.................
GGGTTS








GGGGS.
S
Template Predicted Secondary structure  .................














.

Template SS confidence 















































































   81... .....90.........100.........110.........120.........130....... ..140..
 
   386...390.........400..
Predicted Secondary structure 



Query SS confidence 
















Query Sequence  VEEEDYDSRFLRCVELV
Query Conservation 
  

  

   

  
Alig confidence 
















Template Conservation 
     

    

  
Template Sequence  DARGGLNNSLKQVLQFI
Template Known Secondary structure 
SS
T
Template Predicted Secondary structure 




Template SS confidence 
















   145....150.........160.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions