Job Description P27278 Confidence 95.78% Date Thu Jan 5 11:43:37 GMT 2012 Rank 410 Aligned Residues 77 % Identity 13% Template c1xpuB_ PDB info PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) Resolution 3.05 Å

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		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.										.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		R	T	V	A	I	L	G	G	E	S	S	G	K	S	T	L	V	N	K	L	A	N	I	F	N	T	T	.	.	.	.	.	.	.	.	.	S	A	W	E	Y	G	R	D	Y	V	F	S	H	L	G	G	D	E	I	.	.	.	.	.	.	A	L	Q	Y	S	D	Y	D	K	I	A	L	G	H	A	Q	Y	I	D
Query Conservation																													.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation
Template Sequence		Q	R	G	L	I	V	A	P	P	K	A	G	K	T	M	L	L	Q	N	I	A	Q	S	I	A	Y	N	H	P	D	C	V	L	M	V	L	L	I	D	E	R	P	E	E	V	T	E	M	Q	R	L	V	K	G	E	V	V	A	S	T	F	D	E	P	A	S	R	H	V	Q	V	A	E	M	V	I	E	K	A	K
Template Known Secondary structure										S	S	S	S																	T	T	S																						S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		297	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	V	K	Y	A	N	K	V	A	F	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	V	E	H	K	K	D	V	I	I	L
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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