Job Description P27278 Confidence 98.54% Date Thu Jan 5 11:43:37 GMT 2012 Rank 105 Aligned Residues 145 % Identity 12% Template c1qhiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (thymidine kinase); PDBTitle: herpes simplex virus type-i thymidine kinase complexed with2 a novel non-substrate inhibitor, 9-(4-hydroxybutyl)-n2-3 phenylguanine Resolution 1.90 Å

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		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.									.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.									.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		T	V	A	I	L	G	G	E	S	S	G	K	S	T	L	V	N	K	L	.	.	.	.	.	.	.	.	A	N	I	F	N	T	T	S	A	W	E	Y	G	R	D	Y	V	F	S	H	L	G	G	D	E	I	A	L	Q	Y	S	D	.	.	.	.	.	.	.	.	Y	D	K	I	A	L	G	H	A	Q	Y	I	D
Query Conservation																					.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	Y	I	D	G	P	H	G	M	G	K	T	T	T	T	Q	L	L	D	I	V	Y	V	P	E	P	M	T	Y	W	R	V	L	G	A	S	E	T	I	A	N	I	Y	T	T	Q	H	R	L	D	Q	G	E	I	S	A	G	D	A	A	V	V	M	T	S	A	Q	I	T	M	G	M	P	Y	A	V	T	D	A
Template Known Secondary structure							S	S	T	T	S	S						T	T															T	T	S	S	S															T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		297	.	.	300							.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.					.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure						.	.	.	.	.	.															.	.	.														.											.	.	.	.														.	.
Query SS confidence						.	.	.	.	.	.															.	.	.														.											.	.	.	.														.	.
Query Sequence		F	A	V	K	.	.	.	.	.	.	Y	A	N	K	V	A	F	I	D	T	D	F	V	T	.	.	.	T	Q	A	F	C	K	K	Y	E	G	R	E	H	.	P	F	V	Q	A	L	I	D	E	Y	.	.	.	.	R	F	D	L	V	I	L	L	E	N	N	T	P	.	.	W	V	A	D	G	L	R	S	L	G
Query Conservation						.	.	.	.	.	.															.	.	.														.											.	.	.	.														.	.
Alig confidence						.	.	.	.	.	.															.	.	.														.											.	.	.	.														.	.
Template Conservation
Template Sequence		V	L	A	P	H	I	G	G	E	A	P	P	A	L	T	L	I	F	D	R	H	P	I	A	A	L	L	C	Y	P	A	A	R	Y	L	M	G	S	M	T	P	Q	A	V	L	A	F	V	A	L	I	P	P	T	L	P	G	T	N	I	V	L	G	A	L	P	E	D	R	H	I	D	R	L	A	K	R	Q	R	P
Template Known Secondary structure				G	G	G								S														T								T	T	T	S	S											T						T	T																							T
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	V	D	R	K	E	F	Q	N	L	L	V	E	M	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	R	L	D	L	A	M	L	A	A	I	R	R	V	Y	G
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions