Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 42 Aligned Residues 309 % Identity 12% Template d3thia_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.00

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		27	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure											.	.	.	.	.																.
Query SS confidence											.	.	.	.	.																.
Query Sequence		N	T	L	Y	F	Y	N	W	T	.	.	.	.	.	E	Y	V	P	P	G	L	L	E	Q	F	T	K	E	T	.	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D
Query Conservation											.	.	.	.	.																.
Alig confidence											.	.	.	.	.																.												.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.
Template Sequence		I	T	L	K	V	A	I	Y	P	Y	V	P	D	P	A	R	F	Q	A	A	V	L	D	Q	W	Q	R	Q	E	P	G	V	K	L	E	F	T	D	W	D	S	.	.	.	.	.	.	.	Y	S	A	D	P	P	D	D	L	D	V	F	V	L	D	S	I	F	L	S	H	F	V	D	A	G	Y	L	L	P	F	G
Template Known Secondary structure										S		S	S																		T	T	S									T	.	.	.	.	.	.	.	T	T					T	T								G	G	G							T	T					B
Template Predicted Secondary structure																																											.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.								50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.										.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.
Query Sequence		K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	.	.	.	.	.	.	.	.	.	E	Y	K	G	S	L	L	L	T	D	D	A	R	E
Query Conservation																																																											.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Q	D	I	D	Q	A	E	D	V	L	P	F	A	L	Q	G	A	K	R	N	G	E	V	Y	G	L	P	Q	I	L	C	T	N	L	L	F	Y	R	K	G	D	L	K	I	G	Q	V	D	N	I	Y	E	L	Y	K	K	I	G	T	S	H	S	E	Q	I	P	P	P	Q	N	K	G	L	L	I	N	M	A	G
Template Known Secondary structure		G	G	G		T	T	G	G	G	B								T			T	T																		T	T						T			B																S	S													S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		172	.	.	.	.	.	.	.															180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.							.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Query Sequence		V	F	Q	M	A	L	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	.	.	.	.	.	.	P	N	V	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	T	K	A	S	M	Y	L	E	A	L	I	D	V	T	G	Q	Y	T	E	Y	D	L	L	P	P	L	D	P	L	N	D	K	V	I	R	G	L	R	L	L	I	N	M	A	G	E	K	P	S	Q	Y	V	P	E	D	G	D	A	Y	V	R	A	S	W	F	A	Q	G	S	G	R	A	F	I	G	Y	S	E
Template Known Secondary structure																		T						S	S				S	S	S																										T	T			T	T									T	B								T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.								.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.																																										.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.																																										.	.	.	.	.	.	.
Query Sequence		S	A	F	V	A	R	Q	A	G	T	P	I	D	V	V	W	P	K	E	G	G	.	.	.	.	.	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	.	.	.	.	.	.	.	P	T	P	N	L	A
Query Conservation																							.	.	.	.	.																																										.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.																																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	M	M	R	M	G	D	Y	A	E	Q	V	R	F	K	P	I	S	S	S	A	G	Q	D	I	P	L	F	Y	S	D	V	V	S	V	N	S	K	T	A	H	P	E	L	A	K	K	L	A	N	V	M	A	S	A	D	T	V	E	Q	A	L	R	P	Q	A	D	G	Q	Y	P	Q	Y	L	L	P	A	R	H	Q
Template Known Secondary structure							G	G	G	G	G	T							B	S		S	S															T	T		S														S									S			S	T	T									S	B
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.						.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		A	R	K	L	L	S	P	E	V	A	N	D	K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	.	.	.	.	.	Q	N	D	V	G	A	A	S	S	I	Y	E	E	Y	Y	Q	K	L	K
Query Conservation																													.	.	.	.	.
Alig confidence					.	.	.																						.	.	.	.	.
Template Conservation					.	.	.
Template Sequence		V	Y	E	.	.	.	A	L	M	Q	D	Y	P	I	Y	S	E	L	A	Q	I	V	N	K	P	S	N	R	V	F	R	L	G	P	E	V	R	T	W	L	K	D	A	K	Q	V	L	P	E	A	L
Template Known Secondary structure					.	.	.			T	T	T		T										T		T	T								T	T									T	T	T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		322	.	.				.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions