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Job DescriptionP0AFK9
Confidence99.94%DateThu Jan 5 11:26:37 GMT 2012
Rank63Aligned Residues282
% Identity12%Templated2onsa1
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.55

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30......... 40.........50 .........60.........70.........80.. .......90.........100.
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Query Sequence  NNTLYFYNWTEYVP. . PGLLEQFTKET. GIKVIYSTYESNETMYAKLKTYKDGAYDLVVP. STYYVDKMRKEGMIQKIDK
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Template Sequence  NVKLKVFHAGSLTEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKV. . TELGRKADVIATADYTLIQKMMYPEFANWTIM
Template Known Secondary structure 
GGG
TT
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SSSTTTT
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   32.......40.........50.........60.........70....... ..80.........90.........100.........
 
   102.......110.........120.........130.........140.........150.........160.........170.......
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Query Sequence  . . SKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMAL. .
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Template Sequence  FAKNQIVLAYRNDSRYADEINSQNWYEILKRPDVRFGFSNPNDDPCGYRSLMAIQLAELYYNDPTIFDELVAKNSNLRFS
Template Known Secondary structure 


TTSTTTTT

TTTTSTT


TTT
TT
TTTGGGBS

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   110.........120.........130.........140.........150.........160.........170.........180.........
 
   178.180.........190.........200.........210.........220.........230.........240......
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Query Sequence  . . . . . . . . . . . RKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVV
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Template Conservation                                        
                                         
Template Sequence  EDNGSYVLRMPSSERIEINKSKIMIRSMEMELIHLVESGELDYFFIYKSVAKQHGFNFVELPVEIDLSSPDYAELYSKVK
Template Known Secondary structure  TT


GGG

B
TTTSSGGGTS
STT


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   190.........200.........210.........220.........230.........240.........250.........260.........
 
   247. .250.........260.........270.........280.........290.........300.........310
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Query Sequence  WP. . . . . KEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVAN
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Template Sequence  VVLANGKEVTGKPIVYGITIPKNAENRELAVEFVKLVISEEGQEILREL. GQEPLVPPRADTAVPSLKA
Template Known Secondary structure 
TTS






TT
TTST.T

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   270.........280.........290.........300.........310........ .320.........330.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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