Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 38 Aligned Residues 299 % Identity 18% Template d1y4ta_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		28	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure												.																																														.
Query SS confidence												.																																														.
Query Sequence		T	L	Y	F	Y	N	W	T	E	Y	.	V	P	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	.	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K	S	K	L	T
Query Conservation												.																																														.
Alig confidence												.																																														.																				.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		E	L	N	I	Y	S	A	R	H	Y	N	A	D	F	E	I	I	K	K	F	E	E	K	T	G	I	K	V	N	H	T	Q	A	K	A	S	E	L	I	K	R	L	S	L	E	G	S	N	S	P	A	D	I	F	I	T	A	D	I	S	N	L	T	E	A	K	N	L	G	L	L	S	P	V	S	S	.	.	.	.
Template Known Secondary structure												T																																			G	G	G									S	S										T	T								.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	.	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G
Query Conservation																																												.
Alig confidence		.	.	.																																								.
Template Conservation		.	.	.
Template Sequence		.	.	.	K	Y	L	E	E	F	I	P	A	H	L	R	D	K	D	K	E	W	F	A	I	T	K	R	A	R	I	I	A	Y	N	K	N	T	N	I	D	I	S	K	M	K	N	Y	E	D	L	A	K	A	E	F	K	G	E	I	V	M	R	S	A	T	A	P	Y	S	K	T	L	L	A	S	I	I	A	N	D
Template Known Secondary structure		.	.	.							S		G	G	G	B		T	T	S	S															T	T	S					T	T			S	G	G	G	G	G		G	G	G	T	T							T	T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.												.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T	P	.	.	.	.	.	.	.	.	.	.	.	I	D	V	V	W	P	K	E	G	G	I
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		G	N	.	.	.	K	E	A	K	A	W	A	K	G	V	L	E	N	L	A	T	N	P	K	G	G	D	R	D	Q	A	R	Q	V	F	A	G	E	A	K	F	A	V	M	N	T	Y	Y	I	G	L	L	K	N	S	K	N	P	K	D	V	E	V	G	N	S	L	G	I	I	F	P	N	Q	D	N	R	G	T	H
Template Known Secondary structure				.	.	.														B	S	S	S			S	S											T	S		S														T		S	S									T						T	T	T	T	T	T		B
Template Predicted Secondary structure				.	.	.
Template SS confidence
		159	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A	R	K	L	L	S	P	E	V	A	N	D	K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D	V	G	A	A
Query Conservation
Alig confidence																																																			.	.																		.	.
Template Conservation																																																			.	.																		.	.
Template Sequence		I	N	I	S	G	I	A	M	T	K	S	S	K	N	Q	D	A	A	K	K	F	M	E	F	M	L	S	P	E	I	Q	K	I	L	T	D	S	N	Y	E	F	P	I	R	N	D	V	E	L	.	.	S	Q	T	V	K	D	F	G	T	F	K	E	D	Q	I	P	V	.	.	S	K	I	A	E	N	I	K	E	A
Template Known Secondary structure											T	T		S													T	S																S	S	T	T	S			.	.												B			S			.	.					T	T
Template Predicted Secondary structure																																																			.	.																		.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.
		334	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	I	Y	E	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	I	Y	D	E	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions