Job Description P0AFK9 Confidence 99.97% Date Thu Jan 5 11:26:37 GMT 2012 Rank 60 Aligned Residues 270 % Identity 14% Template d1y3na1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.																	.														.																.	.
Query SS confidence																							.	.	.	.	.																	.														.																.	.
Query Sequence		S	A	A	H	A	D	D	N	N	T	L	Y	F	Y	N	W	T	E	Y	V	P	.	.	.	.	.	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	.	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	.	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	S	.	.	T	Y	Y	V	D	K
Query Conservation																							.	.	.	.	.																	.														.																.	.
Alig confidence																							.	.	.	.	.																	.														.																.	.
Template Conservation
Template Sequence		A	T	W	V	T	E	K	P	L	T	L	K	I	H	M	H	F	R	D	K	W	V	W	D	E	N	W	P	V	A	R	E	V	A	R	L	T	N	V	K	L	V	G	V	A	N	R	A	A	T	N	S	Q	E	Q	F	N	L	M	M	A	S	G	Q	L	P	D	I	V	G	G	D	N	L	K	D	K	F	I	R
Template Known Secondary structure		T	T		S		S	S											T	T	T					T	T	S											S							S		S	S		S											T	S	S	S			S					T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.																								.	.	.
Query SS confidence																			.	.	.	.	.	.	.																								.	.	.
Query Sequence		M	R	K	E	G	M	I	Q	K	I	D	K	S	K	L	T	N	.	.	.	.	.	.	.	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	.	.	.	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y
Query Conservation																			.	.	.	.	.	.	.																								.	.	.
Alig confidence																			.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		Y	G	M	E	G	A	F	I	P	L	N	K	L	I	D	Q	N	A	P	N	L	K	A	F	F	K	T	H	P	E	V	Q	R	A	I	T	A	P	D	G	N	I	Y	Y	L	P	Y	V	P	D	G	L	V	S	R	G	Y	F	I	R	Q	D	W	L	D	K	L	H	L	K	T	P	Q	T	V	D	E	L	Y	T
Template Known Secondary structure					T	T	S	B																													B		T	T	S		B										S															T	T						B
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
																	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.																		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G	N	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		V	L	K	A	F	K	E	K	D	P	N	G	N	G	K	A	D	E	I	P	F	I	N	R	D	P	E	E	V	F	R	L	V	N	F	W	G	A	R	S	T	G	S	N	T	W	M	D	F	Y	V	E	N	G	K	I	K	H	P	F	A	E	V	A	F	K	D	G	I	K	H	V	A	Q	W	Y	K	E	G	L
Template Known Secondary structure									S		T	T		S	S	S									S		T						G	G	G	G	G	T			S		S	S	S	S	T	T						T	T					G	G	G	S																T	T	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
							207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.							240	.	.	.	.	.	.	.	.	.	250	.	.												.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	.	.	.	.	.	.	G	T	P	I	D	V	V	W	P	K	E	G	G	.	.	.	.	.	.	.	.	.	.	.	I	F	W	M	D	S	L	A	I	P	A	N
Query Conservation		.	.	.	.	.																																		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	P	E	I	F	T	R	K	A	R	S	R	E	Q	T	F	G	N	N	I	G	G	M	T	H	D	W	F	A	S	T	A	L	F	N	D	A	L	S	K	N	I	P	G	F	K	L	V	P	M	A	P	P	I	N	S	K	G	Q	R	W	E	E	D	A	R	Q	I	P	R	P	D	G	W	A	I	T	A	T
Template Known Secondary structure		B		T	T	T	T	T	S	G	G	G						T	T	T	T																			S	T	T	T	S	T	T										B		T	T	S		B		B						S	S		S						B	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	N	P	V	E	T	I	K	L	F	D	F	Y	F	G	P	K	G	R	E	L	S	N
Template Known Secondary structure			S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions