Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 56 Aligned Residues 262 % Identity 16% Template d1xvxa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.53

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		24	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure													.																																																		.
Query SS confidence													.																																																		.
Query Sequence		D	D	N	N	T	L	Y	F	Y	N	W	.	T	E	Y	V	P	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	S	.	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K
Query Conservation													.																																																		.
Alig confidence													.																																																		.																	.	.
Template Conservation																																																																																.	.
Template Sequence		S	N	D	S	G	I	V	V	Y	N	A	Q	H	E	N	L	V	K	S	W	V	D	G	F	T	K	D	T	G	I	K	V	T	L	R	N	G	G	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F	A	P	L	.	.
Template Known Secondary structure					S								S																																						G	G	G				S					S	S	S									T	T		B				.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	.	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L
Query Conservation																																																.
Alig confidence		.	.	.	.	.	.																																									.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	D	A	V	T	Q	A	Q	V	A	Q	E	Y	R	P	E	H	G	R	W	T	G	I	A	A	R	S	T	V	F	V	Y	N	P	E	K	I	S	E	A	E	L	P	K	S	I	M	D	L	A	K	P	E	W	K	G	R	W	A	A	S	P	S	G	A	D	F	Q	A	I	V	S	A	M	L
Template Known Secondary structure		.	.	.	.	.	.								B		G	G	G	S		S	S	S	S															T	T	T	S		G	G	G	S		S	S	G	G	G	G	G	S	G	G	G	T	T	S					T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.								.	.	250	.	.
Predicted Secondary structure																																		.																																				.	.	.	.	.	.	.
Query SS confidence																																		.																																				.	.	.	.	.	.	.
Query Sequence		G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	A	A	F	N	S	D	.	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T	P	I	D	V	V	W	.	.	.	.	.	.	.	P	K	E	G	G
Query Conservation																																		.																																				.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.																									.																																				.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		E	.	.	.	.	.	.	.	L	K	G	E	K	A	T	L	E	W	L	K	A	M	K	T	N	F	T	A	Y	K	G	N	S	T	V	M	K	A	V	N	A	G	Q	I	D	G	G	V	I	Y	H	Y	Y	R	F	V	D	Q	A	K	T	G	E	N	S	G	K	T	Q	L	H	Y	F	K	H	Q	D	P	G	A
Template Known Secondary structure			.	.	.	.	.	.	.																						S	S										T	T	S	S	S						T								T	T	T		T	T	T	T	T								T	T		G	G	G
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		154								.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	.	P	T	P	N	L	A	A
Query Conservation																																											.
Alig confidence																																											.
Template Conservation
Template Sequence		F	V	S	I	S	G	G	G	V	L	A	S	S	K	H	P	K	E	A	Q	E	F	V	K	W	I	T	G	K	S	G	Q	D	I	L	R	T	N	N	A	F	E	Y	A	V	G	V	D	A
Template Known Secondary structure											B	T	T		S	S													S										S	S	S			B			B	T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions