Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 54 Aligned Residues 295 % Identity 15% Template d1nnfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.10

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		28	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure												.																																														.
Query SS confidence												.																																														.
Query Sequence		T	L	Y	F	Y	N	W	T	E	Y	.	V	P	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	.	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K	S	K	L	T
Query Conservation												.																																														.
Alig confidence												.																																														.
Template Conservation
Template Sequence		D	I	T	V	Y	N	G	Q	Q	K	E	A	A	T	A	V	A	K	A	F	E	Q	E	T	G	I	K	V	T	L	N	S	G	K	S	E	Q	L	A	G	Q	L	K	E	E	G	D	K	T	P	A	D	V	F	Y	T	E	Q	T	A	T	F	A	D	L	S	E	A	G	L	L	A	P	I	S	E	Q	T	I	Q
Template Known Secondary structure									S																S																						G	G	G				S					S		G	G	G							T	T		B
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	.	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G
Query Conservation																																														.
Alig confidence				.	.	.	.	.	.																																					.																																.	.	.	.
Template Conservation				.	.	.	.	.	.																																																																					.	.	.	.
Template Sequence		Q	T	.	.	.	.	.	.	A	Q	K	G	V	P	L	A	P	K	K	D	W	I	A	L	S	G	R	S	R	V	V	V	Y	D	H	T	K	L	S	E	K	D	M	E	K	S	V	L	D	Y	A	T	P	K	W	K	G	K	I	G	Y	V	S	T	S	G	A	F	L	E	Q	V	V	A	L	S	.	.	.	.
Template Known Secondary structure		T	T	.	.	.	.	.	.			T	T					T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	G	S	G	G	G	T	T	T					T	T	S												.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.																																																																					.	.	.	.
Template SS confidence
		81	.							.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.								.	.	250	.	.	.	.	.	.
Predicted Secondary structure																								.																																										.	.	.	.	.	.	.
Query SS confidence																								.																																										.	.	.	.	.	.	.
Query Sequence		N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	.	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T	P	I	D	V	V	W	.	.	.	.	.	.	.	P	K	E	G	G	I	F	W	M
Query Conservation																								.																																										.	.	.	.	.	.	.
Alig confidence		.	.	.																				.																																										.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	K	M	K	G	D	K	V	A	L	N	W	L	K	G	L	K	E	N	G	K	L	Y	A	K	N	S	V	A	L	Q	A	V	E	N	G	E	V	P	A	A	L	I	N	N	Y	Y	W	Y	N	L	A	K	E	K	G	V	E	N	L	K	S	R	L	Y	F	V	R	H	Q	D	P	G	A	L	V	S	Y
Template Known Secondary structure		.	.	.																							S	S										T	T	S		S																		G	G	G		S								T	T		G	G	G
Template Predicted Secondary structure		.	.	.
Template SS confidence
					151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A	R	K	L	L	S	P	E	V	A	N	D	K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D	V	G	A	A	S	S	I
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.
Template Sequence		S	G	A	A	V	L	K	A	S	K	N	Q	A	E	A	Q	K	F	V	D	F	L	A	S	K	K	G	Q	E	A	L	V	A	A	R	A	E	Y	P	L	R	A	D	V	.	.	.	.	.	.	.	.	.	V	S	P	F	N	L	E	P	Y	E	K	L	E	A	P	V	V	S	A	T	T	A	Q	D	K	E	H
Template Known Secondary structure							B	T	T		S														S											S							.			.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.										.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	E	Y	Y	Q	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	K	L	I	E	E	A
Template Known Secondary structure									.
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions