Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 32 Aligned Residues 323 % Identity 14% Template d1elja_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.85

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		A	D	D	N	N	T	L	Y	F	Y	N	W	T	E	Y	V	P	.	.	.	.	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.																																					.
Template Conservation																																																											.
Template Sequence		K	I	E	E	G	K	V	V	I	W	H	A	M	Q	P	N	E	L	E	V	F	Q	S	L	A	E	E	Y	M	A	L	P	E	V	E	I	V	F	E	Q	K	P	N	L	E	D	A	L	K	A	A	I	P	T	G	Q	G	.	P	D	L	F	I	W	A	H	D	W	I	G	K	F	A	E	A	G	L	L	E	P
Template Known Secondary structure																																											T	T									T	T	T	T		S	.		S						G	G	G							T	T		B
Template Predicted Secondary structure																																																											.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		99	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.							.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure									.																																																		.	.	.	.	.	.
Query SS confidence									.																																																		.	.	.	.	.	.
Query Sequence		I	D	K	S	K	L	T	.	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	.	.	.	.	.	.	W	K	P	E	Y	K	G	S	L	L	L	T	D	D	A	R	E
Query Conservation									.																																																		.	.	.	.	.	.
Alig confidence									.																																																		.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	E	Y	V	T	E	D	L	L	N	E	F	A	P	M	A	Q	D	A	M	Q	Y	K	G	H	Y	Y	A	L	P	F	A	A	E	T	V	A	I	I	Y	N	K	E	M	V	S	E	P	P	K	T	F	D	E	M	K	A	I	M	E	K	Y	Y	D	P	A	N	E	K	Y	G	I	A	W	P	I	N	A	Y
Template Known Secondary structure			T	T	T							T	T	B								T			T	T																		T	T	T		S	S			S	S													B	G	G	G	T	B		S		B				S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																					.	.
Query SS confidence																				.	.	.	.	.	.	.																					.	.
Query Sequence		V	F	Q	M	A	L	R	K	L	G	Y	S	G	N	T	T	D	P	.	.	.	.	.	.	.	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	A	A	F	.	.	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T	P
Query Conservation																				.	.	.	.	.	.	.																					.	.
Alig confidence																				.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		F	I	S	A	I	A	Q	A	F	G	G	Y	Y	F	D	D	K	T	E	Q	P	G	L	D	K	P	E	T	I	E	G	F	K	F	F	F	T	E	I	W	P	Y	M	A	P	T	G	D	Y	N	T	Q	Q	S	I	F	L	E	G	R	A	P	M	M	V	N	G	P	W	S	I	N	D	V	K	K	A	G	I	N
Template Known Secondary structure								T	T	T	S			S			T	T	T	T				T	T	S														T	G	G	G	S		S													T	T	S	S	S						G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		243	.	.	.	.											.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence							.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		I	D	V	V	W	.	.	.	.	.	.	.	.	.	.	P	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	.	V	A	E	T	I	G	Y	P	T	P	N	L	A	A	R	K	L	L	S	P	E	V	A	N	D
Query Conservation							.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence							.	.	.	.	.	.	.	.	.	.																																								.																	.	.
Template Conservation																																																																									.	.
Template Sequence		F	G	V	V	P	L	P	P	I	I	K	D	G	K	E	Y	W	P	R	P	Y	G	G	V	K	L	I	Y	F	A	A	G	I	K	N	K	D	A	A	W	K	F	A	K	W	L	T	T	S	E	E	S	I	K	T	L	A	L	E	L	G	Y	I	P	V	L	T	K	V	L	D	.	.	D	P	E	I	K	N	D
Template Known Secondary structure													T	T																	B	T	T		S																													B			B	G	G	G	G	G	.	.						T
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D	V	G	A	A	S	S	I	Y	E	E	Y	.	.	.	Y	Q	K	L	K	A	G	R
Query Conservation																															.	.	.
Alig confidence																															.	.	.
Template Conservation
Template Sequence		P	V	I	Y	G	F	G	Q	A	V	Q	H	A	Y	L	M	P	K	S	P	K	M	S	A	V	W	G	G	V	D	G	A	I	N	E	I	L	Q	D	P
Template Known Secondary structure													T								T	T																	T	S	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions