Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 23 Aligned Residues 320 % Identity 15% Template c3uorB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri Resolution 2.20 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure															.	.												.																					.																																.
Query SS confidence															.	.												.																					.																																.
Query Sequence		N	T	L	Y	F	Y	N	W	T	E	Y	V	P	.	.	P	G	L	L	E	Q	F	T	K	E	T	.	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	.	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K	.
Query Conservation															.	.												.																					.																																.
Alig confidence															.	.												.																					.																																.
Template Conservation
Template Sequence		T	T	V	R	F	W	A	M	G	K	E	A	E	V	V	A	E	L	V	A	D	F	E	K	Q	N	P	T	I	H	V	D	V	Q	N	I	P	M	T	A	A	H	E	K	L	L	T	A	F	A	A	D	G	L	P	D	V	C	Q	L	G	N	T	W	L	P	E	F	A	L	L	D	T	L	E	P	M	Q	P	Y
Template Known Secondary structure										T														T	T	T	S	T	T										T	T	T	T	T									T	T				S						G	G	G							T	T		B
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
					102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.														.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	K	G	S	L	L	L
Query Conservation		.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	R	S	K	I	V	D	P	A	D	Y	F	P	G	V	W	D	T	N	L	V	D	G	T	L	Y	G	V	P	W	Y	V	D	T	R	L	L	F	Y	R	K	D	L	L	R	E	A	G	Y	S	Q	M	P	K	T	W	A	E	M	E	Q	V	M	A	A	I	K	R	K	V	G	P	D	R	Y	A	I	L	M
Template Known Secondary structure						S	S			G	G	G	B							T	T			T	T																								T	T		S	S				B																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G	N	T	.	.	.	.	.	.	.	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	A	.	.	.	.	.	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A
Query Conservation																							.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		P	L	N	E	F	E	Q	Q	L	S	F	A	L	Q	Q	D	D	R	L	L	R	D	H	D	N	Y	G	N	F	R	G	A	G	F	R	K	A	L	G	F	Y	D	N	M	Y	Q	Q	G	W	A	P	K	V	S	E	T	Q	V	S	N	V	W	Y	E	F	F	N	G	Y	Y	A	F	Y	L	S	G	P	W	N	V
Template Known Secondary structure			T	T											T	S	S	S		S			T	T	T	T				T	T	S																T	T	S	S		S			G	G	G		S								T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.											.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	A	R	Q	A	G	T	.	.	.	.	.	.	.	.	.	.	P	I	D	V	V	W	P	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A	R	K	L
Query Conservation										.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.																																																														.
Template Conservation																																																																																	.
Template Sequence		R	E	F	K	L	R	Q	P	P	G	M	E	G	N	W	G	T	A	P	L	P	G	P	N	G	L	G	A	G	I	A	G	G	S	S	L	V	I	F	K	S	S	Q	H	K	D	A	S	W	K	L	I	E	Y	L	S	Q	P	Q	V	Q	A	R	F	H	A	I	I	G	D	L	P	P	R	R	S	T	W	K	.
Template Known Secondary structure										G	G	G	T	T	S								B	T	T	S	S													B	T	T		S													T	S														B		S	B						.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330				.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		L	S	P	E	V	A	N	D	K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D	V	.	.	.	G	A	A	S	S	I	Y	E	E	Y	Y	Q	K	L	K	A	G	R
Query Conservation																													.	.	.
Alig confidence		.																											.	.	.
Template Conservation		.
Template Sequence		.	L	P	S	L	A	N	D	A	L	A	H	A	F	G	D	Q	L	E	R	V	K	A	T	P	K	V	L	E	W	E	R	I	V	Q	E	M	R	L	V	T	E	R	V	V	R	G	G
Template Known Secondary structure		.	S					T		T	T	T							T	T	T								T	T
Template Predicted Secondary structure		.
Template SS confidence
			347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions