Job Description P0AFK9 Confidence 41.48% Date Thu Jan 5 11:26:37 GMT 2012 Rank 108 Aligned Residues 184 % Identity 15% Template c3uifA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt Resolution 2.60 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K	I	D	K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	P	E	E	L	R	K	Q	G	I	K	V	E	W	V	P	A	A	X	A	S	V	G	P	V	I	N	E	G	F	A	S	G	K	I	D	F	G	I	Y	G	D	L	P	P	I	I	L	N	A	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	V
Template Known Secondary structure									T	T										T	T												T	T									S										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																										.	110	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	E	Y	K	G	S	L	L	L	T	D	D	A	.	.	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K
Query Conservation																																																	.	.
Alig confidence																					.	.	.	.	.	.	.	.																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	V	A	P	W	G	T	T	S	N	S	Y	L	V	V	P	K	N	.	.	.	.	.	.	.	.	S	T	A	K	S	I	K	D	L	K	G	K	K	I	A	L	H	R	G	R	P	W	E	L	A	F	S	N	L	L	Q	S	E	G	L	T	F	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			T	T	.	.	.	.	.	.	.	.					S	G	G	G	G	T	T	S						T	T	S	T												T	T			G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130									.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		K	L	M	P	N	V	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G	S	A	F	V	A	R	Q	A	G	T	P	I	D	V	V	W	P	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	.	.	.	A	K	N	K	E	G	A	L	K	L	I	N
Query Conservation																																																																		.	.	.
Alig confidence		.	.	.																																																														.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	F	K	I	V	N	V	N	P	Q	V	G	A	A	A	L	A	S	G	T	V	D	G	F	F	S	L	F	D	S	Y	I	L	E	D	R	G	V	G	K	I	I	W	S	T	K	T	A	P	V	D	W	K	L	X	G	G	V	W	A	R	N	D	F	V	K	Q	N	P	E	I	T	Q	A	I	V	T
Template Known Secondary structure		.	.	.	S																	T	S	S	S					S	T	T							T	T	S							G	G	G	S		G	G	G	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions