Job Description P0AFK9 Confidence 100.00% Date Thu Jan 5 11:26:37 GMT 2012 Rank 49 Aligned Residues 320 % Identity 13% Template c3oo6A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose Resolution 2.15 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.																																.
Query SS confidence																	.	.	.	.	.																																.
Query Sequence		D	N	N	T	L	Y	F	Y	N	W	T	E	Y	V	P	.	.	.	.	.	P	G	L	L	E	Q	F	T	K	E	T	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	.	T	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q	K
Query Conservation																	.	.	.	.	.																																.
Alig confidence																	.	.	.	.	.																																.
Template Conservation
Template Sequence		G	N	G	P	I	T	F	G	S	N	Y	S	D	E	A	P	K	A	A	F	A	S	L	M	Q	Q	A	T	T	S	T	T	V	P	V	T	V	N	T	T	D	H	N	T	F	Q	N	N	I	S	N	Y	L	Q	G	T	P	D	S	L	A	T	W	F	A	G	Y	R	L	Q	F	F	A	A	Q	G	L	L	T	P
Template Known Secondary structure				S										S																																			T							S				S							T								T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.										.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																							.	.	.	.	.	.	.	.	.
Query SS confidence																				.																																							.	.	.	.	.	.	.	.	.
Query Sequence		I	D	K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	.	K	P	F	D	P	N	N	D	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	.	.	.	.	.	.	.	.	.	W	K	P	E	Y	K	G	S	L	L	L	T	D	D
Query Conservation																				.																																							.	.	.	.	.	.	.	.	.
Alig confidence																				.																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	D	V	W	D	K	I	G	G	T	F	N	D	A	A	K	S	L	S	K	G	L	D	G	H	Y	Y	L	V	P	L	Y	N	Y	P	W	V	V	F	Y	N	K	S	V	F	Q	S	K	G	Y	E	V	P	A	S	W	E	A	F	I	A	L	A	R	K	M	Q	S	D	G	L	V	P	L	A	F	A	D	K
Template Known Secondary structure										G	G	G	S							T	T	B		T	T	S		B																							T						B														T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.														180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query Sequence		A	R	E	V	F	Q	M	A	L	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	Y	S	G	N	T	T	D	P	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	.	.	.	.	A	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W	N	G
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation
Template Sequence		D	G	W	P	A	L	G	T	F	D	I	L	N	L	R	I	N	G	Y	D	Y	H	I	K	L	M	K	H	E	V	P	W	T	D	P	G	V	T	K	V	F	D	Q	W	R	E	L	A	A	Y	Q	Q	K	G	A	N	G	R	T	W	Q	D	A	A	K	A	L	E	N	K	Q	A	G	M	M	F	Q	G	S	N
Template Known Secondary structure		T	S	S	T	T												T										T	T	S	S		T	T	S															T	T	B		S	S	G	G	G												T	T	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.											.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	F	V	A	R	Q	A	G	T	P	I	D	V	V	W	.	.	.	.	.	.	.	.	.	.	P	K	E	G	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	G	Y	P	T	P	N	L	A	A	R
Query Conservation																		.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																																																						.
Template Conservation																																																																																	.
Template Sequence		Q	V	A	A	N	Y	S	A	K	N	L	P	D	L	D	F	F	V	F	P	A	I	N	P	Q	Y	G	T	D	Y	M	D	A	P	T	D	G	F	I	L	P	K	K	G	K	N	A	A	A	A	K	K	V	L	Q	Y	I	G	T	A	E	A	E	A	A	F	L	K	T	D	H	W	D	V	G	L	A	N	G	.
Template Known Secondary structure							S		T	T	T	G	G	G								B			T	T	T	T	T													B	T	T		S													T	S									T	T			S	S					T	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.							330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.
Query Sequence		K	L	L	S	P	E	V	A	N	D	K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D	.	.	.	.	.	.	V	G	A	A	S	S	I	Y	E	E	Y	Y	Q	K	L	K	A	G	R
Query Conservation																														.	.	.	.	.	.
Alig confidence		.	.	.																										.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	I	A	P	T	Y	N	D	I	Q	K	K	S	V	A	E	I	G	K	C	K	S	V	S	Q	F	M	D	R	D	T	V	P	D	M	A	N	A	M	I	K	L	I	Q	Q	F	I	D	Q	P
Template Known Secondary structure		.	.	.				T	T															S	S										S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions